Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g3621 ATGAGGAAGCCTAGTTGTGATATCAAATTAGACAAGAACATCAAGAACAAAGGAGTTTGGTCAAAACAAGAAGACCAGAAACTCATAGATTATATCAACAAACACGGTGAGGTTTGTTGGAGTACACTCCCTCAAGCTGCAGGTCTACTTCGGTGTGGTAAAAGTTGTAGGCTGAGATGGATGAATTATCTACGGCCAGATCTTAAAAGAGGTAACTTTGGTGAAGATGAAGAAGATCTCATCGTCAAGCTTCATGCACTTCTAGGCAACAGGTGGTCACTAATTGCTGGGAGATTGCCTGGACGTACGGATAATGAAGTGAAGAACTTTTGGAACTCTCATATAAGAAAAAAGTTGATTAGAAAAGGAATTGATCCAAATAATCATAGTGTAAACCACAAAATTCCTCCCCTTCAAAACCAAATCATGTTTAATAGTTTAAAATATTTTGGGTTGAAAGACATTAGCAAGAATCAAACAACTAAAACTCACGTCGACAATGATGATAAAGTATCGAATGCTACAAGTATCGAATGCGACAATGATGATATTTTGGATTTAAATCTAGAGCTCTCACTATGA 582 0.3694 MRKPSCDIKLDKNIKNKGVWSKQEDQKLIDYINKHGEVCWSTLPQAAGLLRCGKSCRLRWMNYLRPDLKRGNFGEDEEDLIVKLHALLGNRWSLIAGRLPGRTDNEVKNFWNSHIRKKLIRKGIDPNNHSVNHKIPPLQNQIMFNSLKYFGLKDISKNQTTKTHVDNDDKVSNATSIECDNDDILDLNLELSL* 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g3621 193 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 12 64 IPR017930 -
Tpr2g3621 193 ProSiteProfiles Myb-like domain profile. 65 115 IPR001005 -
Tpr2g3621 193 Gene3D - 71 136 - -
Tpr2g3621 193 CDD SANT 72 115 IPR001005 -
Tpr2g3621 193 PANTHER MYB-LIKE TRANSCRIPTIONAL FACTOR MYB76 2 191 - -
Tpr2g3621 193 SMART sant 69 117 IPR001005 -
Tpr2g3621 193 SMART sant 16 66 IPR001005 -
Tpr2g3621 193 Gene3D - 8 69 - -
Tpr2g3621 193 CDD SANT 20 64 IPR001005 -
Tpr2g3621 193 SUPERFAMILY Homeodomain-like 16 111 IPR009057 -
Tpr2g3621 193 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 65 119 IPR017930 -
Tpr2g3621 193 ProSiteProfiles Myb-like domain profile. 12 64 IPR001005 -
Tpr2g3621 193 Pfam Myb-like DNA-binding domain 70 114 IPR001005 -
Tpr2g3621 193 Pfam Myb-like DNA-binding domain 17 64 IPR001005 -
Tpr2g3621 193 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 2 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g3621 Tpr-Chr2 39283125 39284566 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g3621 2 193 MYB Transcription Factor Family AT4G09460 50.244 1.00e-69 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tpr2g3621 Myb_DNA-binding 1.7e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g3621 K09422 - gmx:100814923 268.855