Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g3600 ATGGCCATGAGTGTAGATCATGATCAAGGTTTTCATGATGGTTTCCTGTGGGAAAATCTATCTTGGTTTGATCTCACAAATTCTGATGACTTGGGTGAGAGTAGCAAACCAAAGTTAGACGTGAAATCAACGAACCAGAACGAAGAAATTAACGAAGGAGAAGCTCTTGCGAATAAGAAGCGAAAGCGAGGTGGGGCCGTGACTAGAAGTGAGAGTAATACTACAATTGGTGAAGGAAAAGATGGAAAGTATCGCGATTCTGATCATGAAATGCACATATTGACTGAGAGAGAAAGGCGAAAGAAAATGAGGAACATGTTCGCTAGCCTTCATGCTTTGCTTCCTCAGCTTCCTTCTAAGGCTGATAAATCAACCATTGTGGATGAAGCTGTGAAGCAAATAAAAAATCTACAACAAATTCTTGAAAACCTAGAAAAGAAGAAGCAAGAAAAGCTCAAATCTGTTTCTCCATTTGGGAGTGAGTCATCATCAGTGATCAACAACTCACAATGGCATCCCTATGAATCAAGGGAAGCAATCTTAGTTGATCAAGGATCCTCAAGTTATAATAATAACTTGCCTACAAATGCAATTGTAACTTCAAATCCTTCAAATGCATTATTACTATCTGCACCTCCAACTCAACAAGTAGCTTTCCAAACTTGGTCTTCTCAAAATGTTGTCTTGAACATTTGTGGTAGTGAAGCACAATTCTGCATATGTGCTACTAAGAAGCCTGGTTTCTTGACAACAATTGCTTTTGTTTTGGAGAAATATATGATTGATGTTGTATCTGCCAACATTTCTTGCAATGGAAATGGAAACTTCTACATGATTATGGCTCATGCAAAACAAGGTTCACATCAAGATGCAAATTCATTGGAGGAAATTTACAAGCAAGCAGCTTTAGAAATTATGACGTTGATCTTTTAA 933 0.3783 MAMSVDHDQGFHDGFLWENLSWFDLTNSDDLGESSKPKLDVKSTNQNEEINEGEALANKKRKRGGAVTRSESNTTIGEGKDGKYRDSDHEMHILTERERRKKMRNMFASLHALLPQLPSKADKSTIVDEAVKQIKNLQQILENLEKKKQEKLKSVSPFGSESSSVINNSQWHPYESREAILVDQGSSSYNNNLPTNAIVTSNPSNALLLSAPPTQQVAFQTWSSQNVVLNICGSEAQFCICATKKPGFLTTIAFVLEKYMIDVVSANISCNGNGNFYMIMAHAKQGSHQDANSLEEIYKQAALEIMTLIF* 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g3600 310 MobiDBLite consensus disorder prediction 34 92 - -
Tpr2g3600 310 MobiDBLite consensus disorder prediction 76 92 - -
Tpr2g3600 310 Coils Coil 127 154 - -
Tpr2g3600 310 CDD bHLH_AtbHLH_like 92 139 IPR045239 -
Tpr2g3600 310 PANTHER TRANSCRIPTION FACTOR BHLH95 11 307 - -
Tpr2g3600 310 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 86 157 IPR036638 GO:0046983
Tpr2g3600 310 SMART finulus 93 143 IPR011598 GO:0046983
Tpr2g3600 310 Gene3D - 80 154 IPR036638 GO:0046983
Tpr2g3600 310 PANTHER - 11 307 IPR044278 GO:0003700|GO:0006355|GO:0009960
Tpr2g3600 310 MobiDBLite consensus disorder prediction 34 67 - -
Tpr2g3600 310 Pfam Helix-loop-helix DNA-binding domain 90 138 IPR011598 GO:0046983
Tpr2g3600 310 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 87 137 IPR011598 GO:0046983
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g3600 13 306 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G49770 35.780 9.23e-47 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tpr2g3600 HLH 2.7e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g3600 - - mtr:MTR_4g085700 428.713