Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g3599 ATGCGTGGCGTTTTACAACCGTTGGATTTAGGTATTCAAATTCCCTACCATTTCAGATGCCCAATCTCTCTTGAGCTTATGCGAGACCCTGTTACCGTCTCCACCGGTCAAACCTACGACCGTAACAGCATCGAGTCGTGGGTTAACACCGGTAACACAACGTGTCCGGTCACGCGAGCCAATCTTACAGATTTTACCTTCATACCAAATCACACGCTCCGCCGCTTAATCCAAGAGTGGTGCGTCGCTAACCGCGCGTTTGGCGTTCAAAGGATTCCAACTCCCAAACAACCTGCAGACCCTTCTCTTGTTCGTTCTTTGCTTAATCAAATTTCTTCCCATTCTGCCCCTGTTCAAATTAAACTTAACTCGCTTCGTCGACTCAGATCATTAACTCGTGACTCGGATTATAACCGCTCTCTCATTGCTTCTCTCAACGTTCGTCATATTGTGTTACCTATTCTTTTCGATTACAACGGTGGTTTAGACGACTTGAAATATGAGTCACTCGCTTTGCTTGTTCTTTTTCCACTCAGTGAGTCAGATTGCACTTCACTCGCTTCCGATTCAGATAAGATTAACTACCTCACAAGTCTTCTTTCACACTCTTTGTTTGATGTCCGAGTTAACTCAGCCGCGTTGATTGAAATCGTTGTCTCTGGGACTCACTTACCGGAGATCCGTGCTCAGGTGAGTAATGTTGACGGGATCTACGACGGTGTGGTTGAGATACTCAGGAATCCGATCTCATATCCTCGTGCGCTCAAGGTAGGGATTAAAGCCTTGTTCGCGCTATGTTTGGTGAAACAGACGCGCCACCGTGCTGTAGCCGCCGGTGCGCCAGCGGTACTTGTTGATCGGCTCGCTGATTTCGAGAAGTGTGATGCAGAGAGAGCGTTGGCGACGGTGGAGTTATTGTGCCGAGTTCCGGCAGGTTGCGCGGCGTTCGCCGGTCATGCGCTAACGGTACCAATGCTTGTGAAGATAATACTGAAGATATCGGATCGTGCGACGGAGTATGCTGCCGGAGCGCTTATGGCGCTGTGTTCTGAATCGGAACGGTGTCAGCGTGAGGCAGTTACGGCGGGAGTGCTGACTCAGCTTTTGCTTCTGGTACAGAGTGATTGCACAGAGAGAGCGAAGAGGAAGGCGCAACTGTTGCTAAAGCTTCTTCGGGATTCGTGGCCTCAAGATTCCGTCGGAAATTCTGACGATTTTGCATGCAGCCATTTTGACTAA 1239 0.4923 MRGVLQPLDLGIQIPYHFRCPISLELMRDPVTVSTGQTYDRNSIESWVNTGNTTCPVTRANLTDFTFIPNHTLRRLIQEWCVANRAFGVQRIPTPKQPADPSLVRSLLNQISSHSAPVQIKLNSLRRLRSLTRDSDYNRSLIASLNVRHIVLPILFDYNGGLDDLKYESLALLVLFPLSESDCTSLASDSDKINYLTSLLSHSLFDVRVNSAALIEIVVSGTHLPEIRAQVSNVDGIYDGVVEILRNPISYPRALKVGIKALFALCLVKQTRHRAVAAGAPAVLVDRLADFEKCDAERALATVELLCRVPAGCAAFAGHALTVPMLVKIILKISDRATEYAAGALMALCSESERCQREAVTAGVLTQLLLLVQSDCTERAKRKAQLLLKLLRDSWPQDSVGNSDDFACSHFD* 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g3599 412 Gene3D - 89 403 IPR011989 -
Tpr2g3599 412 CDD RING-Ubox_PUB 18 59 IPR045210 -
Tpr2g3599 412 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 4 408 - -
Tpr2g3599 412 SUPERFAMILY RING/U-box 12 89 - -
Tpr2g3599 412 Pfam U-box domain 14 85 IPR003613 GO:0004842|GO:0016567
Tpr2g3599 412 SUPERFAMILY ARM repeat 103 391 IPR016024 -
Tpr2g3599 412 SMART Ubox_2 17 80 IPR003613 GO:0004842|GO:0016567
Tpr2g3599 412 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 13 87 IPR013083 -
Tpr2g3599 412 ProSiteProfiles U-box domain profile. 13 87 IPR003613 GO:0004842|GO:0016567
Tpr2g3599 412 PANTHER WDSAM1 PROTEIN 4 408 IPR045185 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g3599 Tpr-Chr2 39097156 39099077 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g3599 1 406 U-box Gene Family AT1G49780 64.407 0.0 519
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g3599 - - var:108341190 663.299
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g3599 2 39097156 39099077 Tpr2g3599 2 39097156 39099077 ECH