Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g3578 ATGGATGTAAAGGGAAGAGGAAACAAAAACAACCTTATGATGAGTAGTAGTGATCAAGAGGATGAGATGGACCTTAGAAGAGGGCCATGGACCGTGGATGAAGACTTAACCCTCATGAATTACATTGCTACTCATGGTGAAGGTCGTTGGAATACCCTAGCCAACTCTGCTGGTCTCAAACGAACGGGAAAGAGTTGTAGATTAAGGTGGTTGAACTATCTTCGACCTGATATTAGACGTGGAAACATCACACTCGAAGAACAACTTTTGATCCTCGAGCTCCATACTCGTTGGGGTAACAGATGGTCGAAAATAGCCCAATATTTACCCGGAAGAACGGACAACGAAATAAAGAATTATTGGAGAACTCGTGTACAAAAACTTGCGAAACAACTCAAATGTGATGTCAATAGCAAGCAATTCAAGGACACCATGCGCTACCTTTGGATGCCAAGGCTAGTCGAACGAATTCAAGCAGCAGCCGTCGCCACTACCACCACAACAACTGTCGCCACCAATGCCATATACAACTACACCAACAATATTAATCACAGCGCCAAAATAATGGGTTCAACTCCAACAATTACAAACAATGAATTTGTGAGTTCACAACCACACATGACACAAAGTTATACCCTAGAGAGAAGCAACACAACCGCATCATCGGATTCATTTGAGAATAAGGTTTCAACAATATCAGATTTGGGTGATAATAATCATAATTATTATGCAAGTTTTGGTAATAACGATAACCCTAATCCTAATTTAGATTATTATCAACCCTTTCATCAATCGTCAGGATTGTTCTATCCAGAATTCGATTTCCAATCCATGGAACCAAACACGCCGTGGATGCAAAATGGGGACTCATCCGACATTTTTTGGAATTCTGAAAACATGTTGTTTTTACAACAACAACTCATGAATAACACCATGTAA 939 0.4026 MDVKGRGNKNNLMMSSSDQEDEMDLRRGPWTVDEDLTLMNYIATHGEGRWNTLANSAGLKRTGKSCRLRWLNYLRPDIRRGNITLEEQLLILELHTRWGNRWSKIAQYLPGRTDNEIKNYWRTRVQKLAKQLKCDVNSKQFKDTMRYLWMPRLVERIQAAAVATTTTTTVATNAIYNYTNNINHSAKIMGSTPTITNNEFVSSQPHMTQSYTLERSNTTASSDSFENKVSTISDLGDNNHNYYASFGNNDNPNPNLDYYQPFHQSSGLFYPEFDFQSMEPNTPWMQNGDSSDIFWNSENMLFLQQQLMNNTM* 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g3578 312 Gene3D - 27 79 - -
Tpr2g3578 312 ProSiteProfiles Myb-like domain profile. 75 125 IPR001005 -
Tpr2g3578 312 CDD SANT 100 123 IPR001005 -
Tpr2g3578 312 Gene3D - 84 147 - -
Tpr2g3578 312 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 22 74 IPR017930 -
Tpr2g3578 312 ProSiteProfiles Myb-like domain profile. 22 74 IPR001005 -
Tpr2g3578 312 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 1 307 IPR044676 GO:0003700|GO:0006355|GO:0043565
Tpr2g3578 312 SMART sant 79 127 IPR001005 -
Tpr2g3578 312 SMART sant 26 76 IPR001005 -
Tpr2g3578 312 SUPERFAMILY Homeodomain-like 24 121 IPR009057 -
Tpr2g3578 312 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 75 129 IPR017930 -
Tpr2g3578 312 Pfam Myb-like DNA-binding domain 80 123 IPR001005 -
Tpr2g3578 312 Pfam Myb-like DNA-binding domain 27 74 IPR001005 -
Tpr2g3578 312 MobiDBLite consensus disorder prediction 1 26 - -
Tpr2g3578 312 PANTHER MYB TRANSCRIPTION FACTOR 1 307 - -
Tpr2g3578 312 CDD SANT 29 74 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g3578 Tpr-Chr2 38960658 38963443 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g3578 1 296 MYB Transcription Factor Family AT3G06490 51.534 7.24e-88 264
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tpr2g3578 Myb_DNA-binding 1.3e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g3578 K09422 - gmx:100791349 396.741
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g3578 2 38960658 38963443 Tpr2g3578 2 38960658 38963443 ECH