Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g3545 ATGGATATAGATTCTGCAAGTATTCAGCCAGTAGTAGAAGATACTGGAAGCAAGCAAGAAGGTTCAGAGGAGAACAAAGCTAAGGATGAAAAAACCAATACAGTACCTTTATACAAGCTTTTCTCATTTGCCGATCCTTTGGATCGTTTATTGATGTTTGTTGGGACTATTGGTGCTATTGGGAATGGAATCTCCATGCCTTTGATGACTTTAATATTTGGAAATATGATCAATGCATTTGGTGGATCATCAAGCACCAAAGAAGTTGTTGATGAAGTTTCTAAGGTGTCCTTGAAATTCGTATACTTGGCTGCGGGTACATTTGTTGCGTCTCTTTTGCAATTGACTTGCTGGATGATCACTGGTGAGAGACAGGCTGCAAGAATTAGAGGTTTATACCTACAAACTATTTTGAGGCAAGATGTGAGTTTCTTCGATAAGGAAACTAATACTGGAGAGGTTGTTGGAAGAATGTCCGGTGATACTGTTCTTATTCAAGATGCCATGGGTGAGAAGGTGGGACAGTTTCTACAGTTAATCGCTACATTCTTTGGAGGTTTTGTTGTAGCATTCATCAAGGGATGGCTTTTAACCGTTGTCATGATGTCTTGTATTCCACTTCTTGTCTTGTCTGGTGCCATGATGAGCATGGTTATTACAAAAGCATCATCCAGTGGACAAACAGCTTATTCTAAAGCAGCAACTGTAGTAGAGCAGACAATTGGTTCTATCAGAACTGTTGCGTCGTTCACCGGAGAGAAACAAGCCATAGCTAAATATGACCAGTCCTTAATCGATGCTTACAAAACTGTAGTGAAGGAGGCCCTAGCTTCTGGTTTGGGGTTTGGTTCACTCTACTTTGTTGTTATTGCTAGTTATGGTTTGGCAGTATGGTTTGGTGCAAAAATGATAATAGAGAAAGGTTATACAGGAGGGGAAGTTGTGACTATAATTTTTGCTGTATTGACTGGATCCATGTCTCTGGGACAGGCATCTCCAAGCTTGAGTGCTTTTGCTGCAGGACAAGCTGCAGCATTTAAGATGTTCGAAACGATTAAAAGGAAGCCGGAAATTGATGCTTACGACACAACCGGGAAAAAGCTTGATGATATTCGCGGAGACATAGAGCTTAGGGAGGTTTGCTTTAGTTATCCTACAAGGCCAGATGAACTGATATTCAATGGATTCTCTCTTGCAATACCAAGTGGGACTACTGTAGCTTTGGTAGGGCAAAGTGGGAGCGGAAAATCCACAGTTGTCAGTTTGATAGAGAGATTTTATGATCCACAAGCTGGTGAAGTTCTCATTGATGGTATCAATCTCAAAGAATTTCAACTTAAATGGATCCGACAGAAAATCGGCCTAGTCAGTCAGGAACCGGTTCTCTTTACTTGCAGCATTAAAGAAAATATTGCCTATGGTAAGGATGGTGCAACGGATGAAGAAATCAGAGCTGCAGCAGAACTTGCTAATGCCGCCAAATTTATAGATAAACTTCCTCAGGGACTAAACACAATGGTTGGTGAGCATGGAACTCAGCTCTCCGGAGGTCAAAAGCAAAGAGTTGCAATTGCAAGAGCAATTCTGAAAGATCCAAGAATCCTTCTTCTTGATGAAGCTACAAGTGCACTTGATGCGGAATCTGAAAGAGTAGTACAAGAGGCATTGGACAGAATAATGGTAAACCGAACAACTGTCATTGTAGCTCACCGCTTAAGTACCATAAAGAATGCTGACACCATTGCGGTTATTCATCAAGGAAAAATAATTGAAAGAGGTTCACATGCTCATCTCACAAGGGATCCCGATGGAGCCTATAGCCAGCTCATTAAGCTGCAAGAAATGAAGGGGTCAGACCAGAATGTTGCAAATGACACAAACAAGTCAAACAATATAGTGCTATCTGAAAGAAGATCGAGTCATAGATCTTTATCCTCGAGATCTATAAGTCAAGTGTCATCTGGAGGTGGAGACAGCGGTCGTCACTCATTCACAGCGTCATTTGGTGTGCCGACCACAATAGTTGGCGTCTCAGAAACCGCAGATGGTGGAACTCAAGCTCCTCCTTCACCACCAGAAGTGCCGCTTTATCGCCTGGCCTATTTAAACAAGCCAGAAATTCCTGTCTTACTTATAGGGACAATAGCTGCAGTGCTGCATGGTGTAATATTACCGGTTTTCGGCCTATTGCTTTCGAAAATGATAAGTATTTTCTACGAGTCACATGACGAACTTCGTCACGATTCAAAAGTTTGGGCGTTAGTATTTGTTGGGTTTGGTGTTGCGTCGTTATTCATTTTTCCATGTAGATTCTACTTTTTTGGCATTGCTGGAGGTAAGTTGATCAAAAGGATAAGAAAAATGTGTTTTGAGAAGGTAGTTCACATGGAAGTAAGTTGGTTTGATGAATCTGAGCATTCAAGTGGAGCAATTGGAGCAAGGCTCTCAACCGATGCAGCTTCGATTCGAGCTTTGGTTGGTGATGCACTTGGTTTACTGGTTGAAAATATTTCTACAGCTATAGCTGGTTTGGTAATTGCTTTTGTAGCTAGCTGGCAGCTTGCTCTTGTAATCCTTGCTTTGGTGCCTCTACTAGGACTTAATGGATTTTTGCAAGTGAAGTTCTTGAAAGGGTTCAGCAATGATTCAAAGAAATTGTATGAGGAGGCAAGTCAAGTGGCGAACGATGCAGTGGGGAGTATAAGAACAATTGCTTCTTTCTGTTCTGAAGAGAAGGTGATGGACCTATATAAGAAAAAATGTGAGGGACCAATTAAGACAGGCATAAGGCGAGGGATAGTAAGCGGATTTGGTTTTGGGATATCATTCTTCGTGCTGTATGCAGTTTATGCAACCAGTTTTTATGCTGGAGCACGTCTCGTCGAGGATGGAAAATCTACATTCTCAGACGTTTTTCGTGTATTTTTTGCCCTAAGCATGGCAGCTATAGGACTCTCTCAATCCGGGTCGTTGGTACCTGATTCGACTAAGGCAAAAAGTGCAGCTGCTTCCATATTTGCTATTCTTGATAGGAAATCACTCATAGATCCAAATGATGAATCAGGAATGACATTGGAAGAAGTCAAGGGTGAAATTGAGTTAAAGCATGTCAGTTTCAAGTATCCTACTAGACCCGATGTTCAAATATTCAGAGATCTTAGCTTGACTATTCACTGTGGCAAGACAGTTGCACTTGTTGGAGAAAGTGGAAGCGGAAAATCAACAGTGATCTCGTTAATACAAAGATTTTATGATCCAGATTCAGGTCACATTACACTTGATGGAAAAGAAATCCAAAGTCTACAAGTGAAATGGCTAAGACAACAAATGGGTCTAGTAAGCCAAGAGCCTGTTCTTTTCAATGATACCATCAGAGCCAATATTGCATACGGAAAAGGAGGAGATGCATCGGAAGCAGAGATTATAGCTGCAGCAGAATTAGCAAATGCGCACAAGTTTATAAGTAGTTTGCAAAAGGGTTATGATACGATAGTAGGAGAGAGAGGAGTTCAATTATCCGGGGGACAGAAACAGCGTGTGGCAATTGCAAGAGCTATAGTGAAGAATCCAAAAATACTATTACTAGATGAAGCAACTAGTGCACTTGATGCTGAGTCTGAGAAGGTGGTTCAAGATGCACTTGATCGTGTTATGGTGGAGCGGACGACAATAATAGTAGCTCATAGGTTATCAACTATTAAAGGTGCAGATTTAATTGCAGTAGTTAAGAATGGTGTTATAGCAGAGAAAGGAAAACATGAAGCATTGCTCCGTAAGGGTGGGGACTATGCTTCTTTAGTAGCATTACATACAAGTGCTTCTAGTTCTACATCTTAG 3837 0.4128 MDIDSASIQPVVEDTGSKQEGSEENKAKDEKTNTVPLYKLFSFADPLDRLLMFVGTIGAIGNGISMPLMTLIFGNMINAFGGSSSTKEVVDEVSKVSLKFVYLAAGTFVASLLQLTCWMITGERQAARIRGLYLQTILRQDVSFFDKETNTGEVVGRMSGDTVLIQDAMGEKVGQFLQLIATFFGGFVVAFIKGWLLTVVMMSCIPLLVLSGAMMSMVITKASSSGQTAYSKAATVVEQTIGSIRTVASFTGEKQAIAKYDQSLIDAYKTVVKEALASGLGFGSLYFVVIASYGLAVWFGAKMIIEKGYTGGEVVTIIFAVLTGSMSLGQASPSLSAFAAGQAAAFKMFETIKRKPEIDAYDTTGKKLDDIRGDIELREVCFSYPTRPDELIFNGFSLAIPSGTTVALVGQSGSGKSTVVSLIERFYDPQAGEVLIDGINLKEFQLKWIRQKIGLVSQEPVLFTCSIKENIAYGKDGATDEEIRAAAELANAAKFIDKLPQGLNTMVGEHGTQLSGGQKQRVAIARAILKDPRILLLDEATSALDAESERVVQEALDRIMVNRTTVIVAHRLSTIKNADTIAVIHQGKIIERGSHAHLTRDPDGAYSQLIKLQEMKGSDQNVANDTNKSNNIVLSERRSSHRSLSSRSISQVSSGGGDSGRHSFTASFGVPTTIVGVSETADGGTQAPPSPPEVPLYRLAYLNKPEIPVLLIGTIAAVLHGVILPVFGLLLSKMISIFYESHDELRHDSKVWALVFVGFGVASLFIFPCRFYFFGIAGGKLIKRIRKMCFEKVVHMEVSWFDESEHSSGAIGARLSTDAASIRALVGDALGLLVENISTAIAGLVIAFVASWQLALVILALVPLLGLNGFLQVKFLKGFSNDSKKLYEEASQVANDAVGSIRTIASFCSEEKVMDLYKKKCEGPIKTGIRRGIVSGFGFGISFFVLYAVYATSFYAGARLVEDGKSTFSDVFRVFFALSMAAIGLSQSGSLVPDSTKAKSAAASIFAILDRKSLIDPNDESGMTLEEVKGEIELKHVSFKYPTRPDVQIFRDLSLTIHCGKTVALVGESGSGKSTVISLIQRFYDPDSGHITLDGKEIQSLQVKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDASEAEIIAAAELANAHKFISSLQKGYDTIVGERGVQLSGGQKQRVAIARAIVKNPKILLLDEATSALDAESEKVVQDALDRVMVERTTIIVAHRLSTIKGADLIAVVKNGVIAEKGKHEALLRKGGDYASLVALHTSASSSTS* 1279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g3545 1278 Gene3D ABC transporter type 1, transmembrane domain 98 999 IPR036640 GO:0005524|GO:0016021
Tpr2g3545 1278 MobiDBLite consensus disorder prediction 1 30 - -
Tpr2g3545 1278 Gene3D - 1022 1277 IPR027417 -
Tpr2g3545 1278 Gene3D - 373 631 IPR027417 -
Tpr2g3545 1278 SMART AAA_5 1059 1252 IPR003593 -
Tpr2g3545 1278 SMART AAA_5 402 700 IPR003593 -
Tpr2g3545 1278 PANTHER - 11 1273 - -
Tpr2g3545 1278 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 367 613 IPR027417 -
Tpr2g3545 1278 ProSitePatterns ABC transporters family signature. 514 528 IPR017871 GO:0005524
Tpr2g3545 1278 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1021 1269 IPR027417 -
Tpr2g3545 1278 Pfam ABC transporter transmembrane region 710 980 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tpr2g3545 1278 Pfam ABC transporter transmembrane region 52 326 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tpr2g3545 1278 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 375 611 IPR003439 GO:0005524
Tpr2g3545 1278 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 711 997 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tpr2g3545 1278 SUPERFAMILY ABC transporter transmembrane region 698 1016 IPR036640 GO:0005524|GO:0016021
Tpr2g3545 1278 Pfam ABC transporter 394 542 IPR003439 GO:0005524
Tpr2g3545 1278 Pfam ABC transporter 1051 1200 IPR003439 GO:0005524
Tpr2g3545 1278 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1032 1269 IPR003439 GO:0005524
Tpr2g3545 1278 CDD ABC_6TM_Pgp_ABCB1_D2_like 700 1015 - -
Tpr2g3545 1278 CDD ABC_MTABC3_MDL1_MDL2 375 613 - -
Tpr2g3545 1278 MobiDBLite consensus disorder prediction 617 660 - -
Tpr2g3545 1278 CDD ABC_6TM_Pgp_ABCB1_D1_like 52 336 - -
Tpr2g3545 1278 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 53 340 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tpr2g3545 1278 SUPERFAMILY ABC transporter transmembrane region 39 359 IPR036640 GO:0005524|GO:0016021
Tpr2g3545 1278 CDD ABC_MTABC3_MDL1_MDL2 1032 1267 - -
Tpr2g3545 1278 PANTHER ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL 11 1273 - -
Tpr2g3545 1278 ProSitePatterns ABC transporters family signature. 1172 1186 IPR017871 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g3545 Tpr-Chr2 38621971 38627770 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g3545 26 1270 Calmodulin-binding Proteins AT2G36910 45.159 0.0 1069
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g3545 K05658 - gmx:100800293 2017.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g3545 2 38621971 38627770 Tpr2g3545 2 38621971 38627770 ECH