Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g3544 ATGTTGGCAAAGGCTAGTTTGGATGAAGATATTACTTCAACTGAGATGACAGGGTCAGCAGGTCATCATCCACCAGTTTCTGCAGGTTCTGAAAATGTTCAAGACATGGCTGACATGAACCAACAGAATTCAAAGAAGAACAAGGTGAAGGATCATAGCAATAAAACAGTACCCTTTTACAAGCTTTTCTCATTTGCAGACTCTTGGGATTATATGCTTATGTTTGTTGGTACTTTAAGTGCTGTTGGGAATGGACTCTCTATGCCTTTAATGACTATAATTATCGGAGATGCTCTTGATGCTTTTGGAGGAAATGTTAACACTAAACAAATAGTTCATCAAGTTTCCAAGGTGTCTCTCAAGTTTGCAATCATGGGTGCATGCACTTTTCTTGCAGTGTTTCTACAGGTGTCTTGCTGGATGATCACAGGGGAGATACAGTCTGCAAGAATAAGGGCATTATACCTCAAAGCAATTTTACGGCAAGATATCAGTTTTTTTGATACAGAAACAAACAGTGGTGAAGTTGTTGGAAGAATGTCAGGTGACACAGTTCTTATTCAAGAAGCCATGGGAGAGAAGGTAGGAAAATTCATACAGTATGTGTCATGTTTTATAGGAGGTTTAGTTGTGGCATTCATCAAGGGTTGGCTTCTAACCCTTATCCTTCTATCGTCTCTCCCTCTTCTTGTCATCTCTGGTTCATTAATGAGCTTTGCATATGGAATGATGGCATCCCGTGGACAAGCAGCTTATTCTGAAGCAGCAATTATAGTAGAGCGGATAATCGGGTCAATTCGAACAGTTGCATCATTTACTGGCGAAAAACAAGCTATAGCTCAATACAATATATCCTTAACTAAATCTTATAAAATTGGAGTGCAAGAAGGACTGGCTATTGGTTTTGGCCTTGGTACGGTTCGTTTATTTGTTTATTGCTCTTATGCTTTGACCGTATGGTTCGGAGGGAAGATGGTACTAGAGAAAGGTTATACAGGAGGTGAAGTCATAAGTGTATTTTTTGCAATACTAACAGGTTCCATGTCTCTAGGACAAGCATCTCCATGTTTAACTGCATTTGCTGCTGGACAAGCTGCAGCCTTTAAGATGTTTGAAACAATTAAAAGGAAGCCAGCAATCGATGCTTATGATATTACTGGGCTAAAGCTTGATGACATTCGCGGAGACATAGAGCTTAGGGAGGTTTGCTTTAGTTATCCTGCAAGACCAAATGAAATGATATTCAATGCATTTTCTATTTCAATATCAAGTGGCACTACCACGGCTTTGGTAGGGCAAAGTGGGAGTGGGAAATCGACGGTTATTAGTTTGATAGAGAGATTTTATGATCCACAAGGTGGTGAAATTTTCATTGATAGTATCAACCTTAGAGAATTTCAACTGAAATGGATCAGACAGAAAATAGGCCTAGTCAGTCAAGAACCAATTCTCTTTGCTGGTAGCATTAAAGAGAACATTGGCTACGGTAAGGATGCCGCAACCGATGAAGAAATCAGAGCTGCAGCCGAACTTGCTAATGCTGCTAACTTCATCGATAAGTTCCCTCATGGACTTGAAACAATGGTCGGAGAGCATGGAGCTCAGCTTTCTGGAGGCCAAAAGCAAAGAATTGCTATAGCAAGAGCAATTCTGAAAGATCCAAGAATTCTACTCCTTGATGAAGCAACAAGCGCACTTGATGCAGAATCTGAAAGATTAGTACAAGAGACGCTAGACAGAATTATGATAAACCTAACAACCATCATCATAGCCCACCGCCTTAGCACAATAAGGAATGCTGATAACATTGCCGTTATTCACCAAGGGAAAGTCGTAGAAAAAGGTACACATGCGGAGCTCACTAAAGATCCTGATGGAGCTTATAGCCAACTGATTAGGCTTCAAGAAATTAAAAAGGATTCATCAGAACAGTATGGTGCTAATGACTCAGATAAGCTAGAAAACTTTGTAGATTCTGGAAGAGAGTCAAGCCAAAGGTCTTTAAGCCGTGACAACTCATTTCGAGTATCAAATTCTATTCCTACCACACTAGTACAAGGATCTGAAGTTGTTCCTTCAACATCAGCATCATCACATATAAGTAAAACTCAAGATGTCCCATTTCTCCGCCTCGCTTATCTTAACAAGCCTGAAATCCCAGTCTTACTCATAGGGACTCTAGCTGCAGCATTTATCGGAGCAATACTACCTATTGTGGGATTTCTAACCTCCAAGATGATAAATACATTCTTTGAGCCTGCAGATGAACTTCGTAAAGACTCAAAGTTTTGGTCACTAATATTTGTTTCCCTTAGTGTGGCTTGCTTTGCTTTCCATCCATTAAGGTCCTACTTTTTTGCGGTAGCTGGTTCGAAGTTGATAAAAAGGATCCGCTTGATGTGCTTTGAGAAAATAATTCACATGGAAGTAGGCTGGTTTGATAAAGCTGAGAATTCAAGTGGTGCACTTGGAGCAAGGCTGTCAATTGATGCTGCTTCAATTCGAACTTTGGTTGGCGATGCACTTGGTTTGCTTGTTCAAGATATTTCTACAGTTATTACAGCCTTGGTAATTTCCTTTGAGGCGAATTGGCAGCTGTCTCTCATCATTATTGTTCTGCTACCGCTACTATTAGTAAGTGGACATTTTCAAATTAAGTCCATGCAAGGATTCAACACAGATGCGAAGAAACTATTTGAGGAAGCAAGTCAAGTAGCGAAGGATGCAGTAGGGAATATCAGAACAGTTTCTGCTTTCTGTGCCGAAGAGAAGGTGATGGAGTTATACCAGAAGAAATGTGTAGTACCAGTACAGACAGGAAAAAGGCAGGGTTTAGTTAGTGGAATTGGTTTTGGCATATCAAACTTCTTTTTGTTTTGTGTCTATGCAACCAGTTTTTATGCCGGCGCCCAACTTGTTGAGAAGGGAAAAACATCAATATCAGAAGTTTTTCAAGTATTTTTCTCTCTCACAATGGCAACTGTCGCAATAGCTCAATCCGGCTTCACGGCACCAGGAGCTAGTAAAGCAAAAAGTTCTGCTGCTTCTATCTTTTCTATTCTTGATCAGAAATCAACAATAGACACCAGTGATGAATCAGGAATGACATTAGAAGATGTGAAAGGAGAGATAGAGTTTTACAATGTCACTTTCAAGTATCCAACTAGACCTGATGTCCATATATTCAAAAAGCTTTCCTTAACCATTCATTCAGGACAGACAGTTGCATTGGTTGGAGAAAGTGGAAGTGGAAAATCAACAGTGATCTCACTGTTGCAAAGATTTTATGATCCAGATTCAGGTCAGATTAAACTGGATGGAACAGAAATCCAAAAGCTACAACTTAAATGGTTTAGGCAACAAATGGGCCTGGTAAGCCAAGAGCCTGTGCTGTTCAATGACACCATCAGAGCCAACATTGCTTATGGAAAAGGTGGTAATGCAACTGAGGATGAAATTGTAGCCGCAGCAGAGCTAGCAAATGCTCATACGTTCATTAGCAGTTTGCAACAGGGGTATGATACAATAGTAGGGGAGAGAGGGACTCAACTATCCGGAGGACAGAAGCAACGCGTGGCAATTGCAAGAGCCATAGTTAACAGTCCAAGAATATTACTACTAGATGAAGCCACAAGTGCACTTGATGCCGAGTCTGAAAAAGTGGTTCAAGATGCACTTGATAGAGTTAGGGTGGACAGAACCACCATTGTAGTGGCTCATAGATTATCTACCATAAAGGGTGCAAATTCAATTGCAGTTGTTAAAAATGGAGTGATTGAAGAAAAAGGAAAGCATGATACATTGCTCAATAAGGGTGGTACCTATGCTTCTTTAGTAGCACTGCACAACTAA 3852 0.4034 MLAKASLDEDITSTEMTGSAGHHPPVSAGSENVQDMADMNQQNSKKNKVKDHSNKTVPFYKLFSFADSWDYMLMFVGTLSAVGNGLSMPLMTIIIGDALDAFGGNVNTKQIVHQVSKVSLKFAIMGACTFLAVFLQVSCWMITGEIQSARIRALYLKAILRQDISFFDTETNSGEVVGRMSGDTVLIQEAMGEKVGKFIQYVSCFIGGLVVAFIKGWLLTLILLSSLPLLVISGSLMSFAYGMMASRGQAAYSEAAIIVERIIGSIRTVASFTGEKQAIAQYNISLTKSYKIGVQEGLAIGFGLGTVRLFVYCSYALTVWFGGKMVLEKGYTGGEVISVFFAILTGSMSLGQASPCLTAFAAGQAAAFKMFETIKRKPAIDAYDITGLKLDDIRGDIELREVCFSYPARPNEMIFNAFSISISSGTTTALVGQSGSGKSTVISLIERFYDPQGGEIFIDSINLREFQLKWIRQKIGLVSQEPILFAGSIKENIGYGKDAATDEEIRAAAELANAANFIDKFPHGLETMVGEHGAQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERLVQETLDRIMINLTTIIIAHRLSTIRNADNIAVIHQGKVVEKGTHAELTKDPDGAYSQLIRLQEIKKDSSEQYGANDSDKLENFVDSGRESSQRSLSRDNSFRVSNSIPTTLVQGSEVVPSTSASSHISKTQDVPFLRLAYLNKPEIPVLLIGTLAAAFIGAILPIVGFLTSKMINTFFEPADELRKDSKFWSLIFVSLSVACFAFHPLRSYFFAVAGSKLIKRIRLMCFEKIIHMEVGWFDKAENSSGALGARLSIDAASIRTLVGDALGLLVQDISTVITALVISFEANWQLSLIIIVLLPLLLVSGHFQIKSMQGFNTDAKKLFEEASQVAKDAVGNIRTVSAFCAEEKVMELYQKKCVVPVQTGKRQGLVSGIGFGISNFFLFCVYATSFYAGAQLVEKGKTSISEVFQVFFSLTMATVAIAQSGFTAPGASKAKSSAASIFSILDQKSTIDTSDESGMTLEDVKGEIEFYNVTFKYPTRPDVHIFKKLSLTIHSGQTVALVGESGSGKSTVISLLQRFYDPDSGQIKLDGTEIQKLQLKWFRQQMGLVSQEPVLFNDTIRANIAYGKGGNATEDEIVAAAELANAHTFISSLQQGYDTIVGERGTQLSGGQKQRVAIARAIVNSPRILLLDEATSALDAESEKVVQDALDRVRVDRTTIVVAHRLSTIKGANSIAVVKNGVIEEKGKHDTLLNKGGTYASLVALHN* 1284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g3544 1283 ProSitePatterns ABC transporters family signature. 536 550 IPR017871 GO:0005524
Tpr2g3544 1283 ProSitePatterns ABC transporters family signature. 1184 1198 IPR017871 GO:0005524
Tpr2g3544 1283 Gene3D ABC transporter type 1, transmembrane domain 61 1014 IPR036640 GO:0005524|GO:0016021
Tpr2g3544 1283 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1044 1281 IPR003439 GO:0005524
Tpr2g3544 1283 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 390 635 IPR027417 -
Tpr2g3544 1283 CDD ABC_MTABC3_MDL1_MDL2 397 635 - -
Tpr2g3544 1283 MobiDBLite consensus disorder prediction 640 673 - -
Tpr2g3544 1283 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1033 1280 IPR027417 -
Tpr2g3544 1283 CDD ABC_6TM_Pgp_ABCB1_D1_like 74 358 - -
Tpr2g3544 1283 Pfam ABC transporter 1063 1212 IPR003439 GO:0005524
Tpr2g3544 1283 Pfam ABC transporter 416 564 IPR003439 GO:0005524
Tpr2g3544 1283 PANTHER - 28 1282 - -
Tpr2g3544 1283 Pfam ABC transporter transmembrane region 74 348 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tpr2g3544 1283 Pfam ABC transporter transmembrane region 722 994 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tpr2g3544 1283 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 397 633 IPR003439 GO:0005524
Tpr2g3544 1283 MobiDBLite consensus disorder prediction 1 26 - -
Tpr2g3544 1283 CDD ABC_6TM_Pgp_ABCB1_D2_like 712 1027 - -
Tpr2g3544 1283 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 75 362 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tpr2g3544 1283 PANTHER ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL 28 1282 - -
Tpr2g3544 1283 SUPERFAMILY ABC transporter transmembrane region 710 1024 IPR036640 GO:0005524|GO:0016021
Tpr2g3544 1283 Gene3D - 1034 1283 IPR027417 -
Tpr2g3544 1283 CDD ABC_MTABC3_MDL1_MDL2 1044 1279 - -
Tpr2g3544 1283 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 723 1009 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tpr2g3544 1283 SUPERFAMILY ABC transporter transmembrane region 61 381 IPR036640 GO:0005524|GO:0016021
Tpr2g3544 1283 SMART AAA_5 424 610 IPR003593 -
Tpr2g3544 1283 SMART AAA_5 1071 1265 IPR003593 -
Tpr2g3544 1283 Gene3D - 387 636 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g3544 Tpr-Chr2 38612537 38619285 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g3544 35 636 Calmodulin-binding Proteins AT2G36910 37.007 1.93e-110 375
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g3544 K05658 - gmx:100777713 1942.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g3544 2 38612537 38619285 Tpr2g3544 2 38612537 38619285 ECH