Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g3543 ATGTTGGCTAAGGCTAGTTTGGATGAAGATATAGCCTCAACTGAGATGACAGGGTCAGCAAGTCAACATACACCAGTTCCTGCAGGTTCTGGAAATTTCCAAGAAATGGTTGACATGCACGAAGATACCAAGAAGAACAAGGTGAAGGATCAAAGCAATAAAACAGTACCCTTTTACAAGCTGTTCTCATTTGCAGACTCTTGGGATTATTCGTTGATGATTGTTGGGACTACAAGTGCTGTAGGGAATGGAGTCTCTATGCCTTTAATGGCTATAATTATTGGAGACACTCTTGATGCTTTTGGAGCAAATGTTAACAACACTAAACAAGTAGTTCATCAAGTTTCCAAGGTGTCTCTCAAGTTTGCAATTTTAGGTGCATGTGCTTTTATTGCGGTGTTTCTACAGGTGTCTTGTTGGATGGTCACAGGGGAGAGACAAGCTGCAAGAATAAGGGCCTTATACCTCAAAGCAGTTTTAAGGCAAGATATCAGTTTCTTTGACAAGGAAACAAACAGTGGTGAAGTTGTTGGAAGAATGTCAGGTGATACAGTTTTTATTCAAGAAGCCATGGGAGAGAAGGTAGGAAAATTCATACAGTGCATGTCATGTTTATTAGGAGGTTTAGTTGTGGCATTCATCAAGGGTTGGCTTCTAACCCTTGTCCTTCTATCGTCTATCCCTCTTCTTCTCCTCTCTGGTTCAATAACGAGCTTTGTATTTGCAATGATGGCATCCCATGGACAAGTAGCTTATTCTGAAGCAGCAATTATAGTAGAGCGGATAACCGGTTCCATTAGAACAGTTGCATCATTTACCGGCGAAAAGCAAGCTATAGCTCAGTACAATAAATCCTTAACTAAAGCTTATAAAATTGGAGTGCAAGAAGGATTGGCTATTGGTTTAGGATTCGGTTCGGCTCGTTTATTAGTTTATTGCACTTATGCTTTGACTGTATGGTTCGGAGGGAAGATGGTACTAGAGAAAGGTTATACTGGAGGTCAAGTCATAAGTGTATTTTTTGCAATTCTAACTGGTTCCTTGTCTCTAGGACAGGCATTTCCATGTTTAACTGCATTTGCAGCTGGACAAGCTGCAGCCTTTAATATGTTTGAAACGATTAAAAGGAGGCCAGAAATTGATGCTTATGATACTACTGGGAGAAAGCTTGATGACATCCGCGGAGACATAGATCTTAGAGAGGTTTGCTTTAGTTATCCTACAAGACCAAATGAAATGATATTCGATGCATTTTCTATTTCAATATCGAGTGGTACTACCGCAGCTTTGGTAGGGCAAAGTGGGAGTGGGAAATCGACGGTTATTAGTTTAATAGAGAGATTTTATGATCCACAAGGTGGTGAAATTCTCATTGATAGTATCAACCTCAGAGAGTTTCAACTGAAATGGATCAGACAGAAAATAGGCCTAGTCAGTCAGGAACCAGTTCTCTTTGCTTGTAGCATTAAAGAGAACATTGGCTATGGTAAGGATGCGGCAACCGATGAAGAAATCAGAGATGCAGCAGAACTTGCTAATGCTTCTAACTTTATTGATAAATTTCCCCATGGACTTGAAACGATGGTCGGAGAGCATGGAGCTCAGCTTTCTGGAGGCCAAAAACAAAGAATTGCTATAGCAAGAGCAATTCTGAAAGATCCAAGAATTTTACTACTCGATGAAGCAACAAGTGCTCTTGACGTGGAATCGGAAAGAGTGGTACAAGAGACTCTAGACAGAATCATGATAAATCGAACAACCATCATTGTAGCTCACCGCCTAAGCACGATAAGGAATGCTGATATCATTGCAATTATTCATCAAGGAAAAGTAGTAGAAAAAGGTACACATGCTGAGCTCACTGAAGATCCTGATGGAGCTTATAGTCAACTCATTAAGCTGCAAGAAACTGAAAGGGATTCATCAGAACAGTATGGTGCTAATGACTCAGATAAGCTAGACAACTTTGTAGATTCTGGAAGAGAGTCAAGCCAAAGGTCTTTAAGCTGTGGATCATTAGGGATAGGAAAAAGCAGTGATAACTCACTCCAAGTATCAAATTCTATTCCTACCACACTAGTACAAGGAGCTGAAGTTGTTTCTTCAACATCAGCATCATCACATATAAGTAAAACTAAAGATGTCCCATTTCTCCGCCTCGCTTATCTTAACAAGCCTGAAATCCCAGTGTTACTCCTAGGGATTCTAGCAGCAGCAGTTACCGGAGCAATGCTACCTATTCTGGGACTTCTAGTCTCCAAGATGATAAATACATTCTTTGAGCCTGCAGATGAACTTCATAAAGACTCGAAGTTTTGGGCATTGATATTTATTTCCCTTGGTGTGGCTTCCTTCGTTTTCCATCCTTTAAGGTCCTACTTTTTTGCATTAGCTGGTTCGAAGTTGATAAAAAGGATCCGGTTAATGTGTTTTGAGAAAATAATTCACATGGAAGTAGGCTGGTTTGATAAAGCTGCGAATTCAAGTGGTGCACTTGGAGCAAGGCTGTCAACTGACGCCGCTTCAATTCGAACTTTGGTTGGCGATGCACTCAGTTTGTTTGTTCAAGATATTGCTACTGTTATTACAGCGTTGGTAATCTCCTTTGTGGCAAATTGGCAGCTTTCTCTCATCATTATTGTTTTGGTACCTCTACTACTAGTAAATGGACATTTTCAAATCAAGTCCATGCAAGGATTCAACACAGATGCAAAGAAACTATATGAGGAAGCAAGTCAAGTAGCGAACGATGCGGTTGGGAATATCAGAACAGTTTCTGCTTTCTGTGCCGAAGAGAAGGTGATGGAGTTATACCAGAAGAAATGTGTAGTACCAGTCCAGACAGGAAAAAGGCAGGGTTTAGTCAGTGGAATTGGTTTTGCCTCCTCTATCTTCTTTCTGTTTTGTGTCTATGCATGCAGTTTTTACGCCGGCGCACAACTTGTTGAGCATGGCAAAACATCAATATCCGAAGTTTTTCAAGTATTTTTCTCTCTCAATATGGCAGCCGTTGCAATATCTCAGTCCGGCTTCATGGCACCAGGAGCCAGTAAAGCAAAAAGTTCTGCTGCTTCTATACTTGCTATCCTTGATCAGAAATCAAAAATTGACACCAGCGATGAATCAGGAATGACACTGGAAGATGTGAAGGGAGAGATAGAGTTTCACAATGTCGCTTTCAAGTATCCAACTAGACCTGATGTTCATATATTCAAAAATCTTTCATTAACCATTCATTCAGGACAGACAGTTGCATTGGTTGGAGAAAGTGGAAGTGGAAAATCAACAGTGATCTCACTGTTGCAAAGATTTTATGATCCAGATTCAGGTCAGATTAAACTGGATGGAACAGAAATCCAAAAGCTACAACTTAAATGGTTTAGGCAACAAATGGGCCTGGTAAGCCAAGAGCCTGTGCTGTTCAATGACACCATCAGAGCCAACATTGCTTATGGAAAAGGTGGTAATGCAACTGAGGCTGAAATTATAGCTGCGGCAGAACTGGCAAATGCTCATAAGTTCATTAGCAGTTTGCAGCAGGGGTATGATACAATAGTAGGGGAGAGAGGGACTCAACTATCTGGAGGACAGAAGCAACGTGTGGCAATTGCAAGAGCAGTAGTTAACGGTCCAAGAATATTACTACTAGATGAAGCCACAAGTGCACTTGATGCTGAGTCTGAAAAAGTGGTTCAAGATGCACTTGACAGAGTGAGGGTGGACAGAACCACCATTGTGGTGGCTCATAGATTATCTACAATAAAAGGTGCAAATTCAATAGCAGTTGTTAAAAATGGAGTGATTGAAGAAAAAGGAAAGCATGACACATTGCTCAATAAGGGTGGTACCTATGCTTCTTTAGTAGCATTGCATACAAGTAGCACTGCTTCATCTTATTAA 3900 0.4069 MLAKASLDEDIASTEMTGSASQHTPVPAGSGNFQEMVDMHEDTKKNKVKDQSNKTVPFYKLFSFADSWDYSLMIVGTTSAVGNGVSMPLMAIIIGDTLDAFGANVNNTKQVVHQVSKVSLKFAILGACAFIAVFLQVSCWMVTGERQAARIRALYLKAVLRQDISFFDKETNSGEVVGRMSGDTVFIQEAMGEKVGKFIQCMSCLLGGLVVAFIKGWLLTLVLLSSIPLLLLSGSITSFVFAMMASHGQVAYSEAAIIVERITGSIRTVASFTGEKQAIAQYNKSLTKAYKIGVQEGLAIGLGFGSARLLVYCTYALTVWFGGKMVLEKGYTGGQVISVFFAILTGSLSLGQAFPCLTAFAAGQAAAFNMFETIKRRPEIDAYDTTGRKLDDIRGDIDLREVCFSYPTRPNEMIFDAFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQGGEILIDSINLREFQLKWIRQKIGLVSQEPVLFACSIKENIGYGKDAATDEEIRDAAELANASNFIDKFPHGLETMVGEHGAQLSGGQKQRIAIARAILKDPRILLLDEATSALDVESERVVQETLDRIMINRTTIIVAHRLSTIRNADIIAIIHQGKVVEKGTHAELTEDPDGAYSQLIKLQETERDSSEQYGANDSDKLDNFVDSGRESSQRSLSCGSLGIGKSSDNSLQVSNSIPTTLVQGAEVVSSTSASSHISKTKDVPFLRLAYLNKPEIPVLLLGILAAAVTGAMLPILGLLVSKMINTFFEPADELHKDSKFWALIFISLGVASFVFHPLRSYFFALAGSKLIKRIRLMCFEKIIHMEVGWFDKAANSSGALGARLSTDAASIRTLVGDALSLFVQDIATVITALVISFVANWQLSLIIIVLVPLLLVNGHFQIKSMQGFNTDAKKLYEEASQVANDAVGNIRTVSAFCAEEKVMELYQKKCVVPVQTGKRQGLVSGIGFASSIFFLFCVYACSFYAGAQLVEHGKTSISEVFQVFFSLNMAAVAISQSGFMAPGASKAKSSAASILAILDQKSKIDTSDESGMTLEDVKGEIEFHNVAFKYPTRPDVHIFKNLSLTIHSGQTVALVGESGSGKSTVISLLQRFYDPDSGQIKLDGTEIQKLQLKWFRQQMGLVSQEPVLFNDTIRANIAYGKGGNATEAEIIAAAELANAHKFISSLQQGYDTIVGERGTQLSGGQKQRVAIARAVVNGPRILLLDEATSALDAESEKVVQDALDRVRVDRTTIVVAHRLSTIKGANSIAVVKNGVIEEKGKHDTLLNKGGTYASLVALHTSSTASSY* 1300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g3543 1299 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 389 635 IPR027417 -
Tpr2g3543 1299 ProSitePatterns ABC transporters family signature. 536 550 IPR017871 GO:0005524
Tpr2g3543 1299 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1042 1290 IPR027417 -
Tpr2g3543 1299 CDD ABC_MTABC3_MDL1_MDL2 397 635 - -
Tpr2g3543 1299 Gene3D - 1043 1297 IPR027417 -
Tpr2g3543 1299 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1053 1290 IPR003439 GO:0005524
Tpr2g3543 1299 SUPERFAMILY ABC transporter transmembrane region 719 1033 IPR036640 GO:0005524|GO:0016021
Tpr2g3543 1299 CDD ABC_6TM_Pgp_ABCB1_D2_like 721 1036 - -
Tpr2g3543 1299 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 732 1018 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tpr2g3543 1299 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 74 362 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tpr2g3543 1299 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 397 633 IPR003439 GO:0005524
Tpr2g3543 1299 Pfam ABC transporter 416 564 IPR003439 GO:0005524
Tpr2g3543 1299 Pfam ABC transporter 1072 1221 IPR003439 GO:0005524
Tpr2g3543 1299 CDD ABC_6TM_Pgp_ABCB1_D1_like 73 358 - -
Tpr2g3543 1299 PANTHER - 41 1294 - -
Tpr2g3543 1299 CDD ABC_MTABC3_MDL1_MDL2 1053 1288 - -
Tpr2g3543 1299 PANTHER ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL 41 1294 - -
Tpr2g3543 1299 Gene3D ABC transporter type 1, transmembrane domain 681 1041 IPR036640 GO:0005524|GO:0016021
Tpr2g3543 1299 Gene3D ABC transporter type 1, transmembrane domain 60 643 IPR036640 GO:0005524|GO:0016021
Tpr2g3543 1299 Gene3D - 387 636 IPR027417 -
Tpr2g3543 1299 Pfam ABC transporter transmembrane region 731 1003 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tpr2g3543 1299 Pfam ABC transporter transmembrane region 73 348 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tpr2g3543 1299 SMART AAA_5 424 596 IPR003593 -
Tpr2g3543 1299 SMART AAA_5 1080 1274 IPR003593 -
Tpr2g3543 1299 ProSitePatterns ABC transporters family signature. 1193 1207 IPR017871 GO:0005524
Tpr2g3543 1299 SUPERFAMILY ABC transporter transmembrane region 54 381 IPR036640 GO:0005524|GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g3543 Tpr-Chr2 38604628 38611040 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g3543 41 1291 Calmodulin-binding Proteins AT2G36910 42.474 0.0 1004
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g3543 K05658 - gmx:100777713 1935.23