Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g3539 ATGGAGCCAGAAGACTGGGATTTGAGCGGCGAAGACCTCGATTCCCTTGAAAGAGAAGCTTATCAGAAGATTGCTCAACTCCGCTCCAACCCCACTCATCCTCCATCATCTTCTTCTCATTCTGCAAACCCTCCTCCTCCTCCTCCTCAAAGATCACTCCCCCCTTCATTCAAATCAGGAGGAGGAGTGACTAACAACACTAACGACCATTCTAAAGAATTCACAAAAGCCTCAGTCAAATTTTTTCTCCATTCCACTGGACTTATTGCAGCAAAGTTTCAATATGATCAGGTAATAGTTGCTGCTTTTAGAAAAATCCCTAAATCTTCTTGGAATGCCAAAGAACGGTTATGGATGTTCCCTATATCTTCTTTGTCAGAAGCAGAAAAGGTTCTTAGAGAAATATCTGGTTATAATGTTCAGGTGGAGAACTTAGATCCCTTAGTGCAACGTGCTATCACTGCTTCCACTTCTGCTCCTGATCTTCGAGATCGATATGATAAGATCCCTAGCTATGTTGAATCAAAGCTTTTGCCATTTCAACGAGACGGTATAAGGTTTATATTGCAGCATGGATGTCGTGCTTTTTTAGCGGATGAAATGGGACTGGGGAAAACGTTGCAGGCCATTGCTGTAGCTGCATGCGTCCAGGATTCGTGGCCTGTTCTTATACTAGCACCATCTGCATTACGATTGCAATGGGCTTCTATGATTCAACAATGGCTGAATATTCCTTCATCAGATATACTTGTTGTCTTATCTCAAAGTGGTGGATCAAATAGAGGAGGTTTCAACATAGTATCTTCAAGTGCGAAAAGCAGCATTCATCTGGACGGACTATTCAACATTATCTCGTATGATTTGGTGCCAAAGATGCAAAATACGCTTATGGCGTCTGATTTTAAGGTTGTAATTGCTGACGAGTCACACTTTCTGAAAAATGCTCAGGCAAAGAGGACAACTGCTTCTCTTCCGATTATAAAGAAAGCTAAATATGCAATATTGCTTAGTGGAACTCCTGCTTTATCTCGACCAATCGAACTATTCAAACAGCTGGAAGCTTTGTATCCTGATGTGTATAAGAATGTTCATGAATATGGTAACCGGTATTGCAAGGGTGGAGTTTTTGGACTTTATCAAGGGGCAAGTAATCATGAAGAATTGCACAATTTGATGAAGGCAACATCGATGATTAGGAGGCTTAAAAAGGATGTTCTTTCTGAACTTCCTGTAAAGCGTAGGCAACAGATTTTCCTAGACTTGGCCGATAAGGACATGAAGCAAATTAATGCTCTATTTCGCGAGTTGGAGATGGTAAAAGCCAAAATTAAGGCTTCTAAATCACAAGAGGAGGCTGAATCACTCAAGTTTACTCAAAAGAATCTTATTAACAGGATTTATACTGATTCTGCGGAAGCCAAGATTCCTGCTGTTCTTGATTATGTTGGAACTGTAATTGAGGCAGGTTGCAAGTTTCTTATATTTGCACACCATCTACCAATGATTGATGCGATACACGAGTTTCTTCTTAAAAAAAAAGTTGGATGCATCCGGATTGATGGAGGTACACCTTCTGGATCAAGGCAACAATTAGTTACAGAGTTTCAGGAAAAAGATGCTATCAAGGCAGCAGTGCTATCTATCAAAGCTGGAGGTGTCGGGTTAACGTTGACTGCTGCCAGCACAGTCATCTTTGCAGAATTGTCTTGGACTCCTGGTGATCTAATTCAGGCCGAAGACCGTGTTCATAGAATTGGCCAGGTTTCTTCGGTAAATATATACTACTTGCTTGCAAATGACACAGTTGATGATATCATATGGGACGTAGTGCAAAGCAAACTGGACAATTTGGGGCAGATGCTTGATGGCCATGAGAACACCTTAAAGGTCTCAGATTCAGATGATCAGCCACCATTGAGTAGCCCTGCAAAGCAGAAAACACTCGACCAATTTGTCAGAAGATGTGAAAACAACAGTAGTGGATTGGAACATCAGTCAACCCCCAAACGTCCTCGGTACTTACCCAAAGGTTCTGTGAAATGGTAA 2046 0.415 MEPEDWDLSGEDLDSLEREAYQKIAQLRSNPTHPPSSSSHSANPPPPPPQRSLPPSFKSGGGVTNNTNDHSKEFTKASVKFFLHSTGLIAAKFQYDQVIVAAFRKIPKSSWNAKERLWMFPISSLSEAEKVLREISGYNVQVENLDPLVQRAITASTSAPDLRDRYDKIPSYVESKLLPFQRDGIRFILQHGCRAFLADEMGLGKTLQAIAVAACVQDSWPVLILAPSALRLQWASMIQQWLNIPSSDILVVLSQSGGSNRGGFNIVSSSAKSSIHLDGLFNIISYDLVPKMQNTLMASDFKVVIADESHFLKNAQAKRTTASLPIIKKAKYAILLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGLYQGASNHEELHNLMKATSMIRRLKKDVLSELPVKRRQQIFLDLADKDMKQINALFRELEMVKAKIKASKSQEEAESLKFTQKNLINRIYTDSAEAKIPAVLDYVGTVIEAGCKFLIFAHHLPMIDAIHEFLLKKKVGCIRIDGGTPSGSRQQLVTEFQEKDAIKAAVLSIKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRVHRIGQVSSVNIYYLLANDTVDDIIWDVVQSKLDNLGQMLDGHENTLKVSDSDDQPPLSSPAKQKTLDQFVRRCENNSSGLEHQSTPKRPRYLPKGSVKW* 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g3539 681 ProSiteProfiles HARP domain profile. 71 147 IPR010003 -
Tpr2g3539 681 MobiDBLite consensus disorder prediction 632 666 - -
Tpr2g3539 681 Pfam Helicase conserved C-terminal domain 485 586 IPR001650 -
Tpr2g3539 681 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 299 635 IPR027417 -
Tpr2g3539 681 PANTHER DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 FAMILY MEMBER 4 659 - -
Tpr2g3539 681 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 186 358 IPR014001 -
Tpr2g3539 681 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 142 394 IPR027417 -
Tpr2g3539 681 Gene3D - 437 667 IPR027417 -
Tpr2g3539 681 CDD SF2_C_SNF 473 597 - -
Tpr2g3539 681 Coils Coil 429 449 - -
Tpr2g3539 681 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 478 629 IPR001650 -
Tpr2g3539 681 CDD DEXHc_HARP_SMARCAL1 177 400 - -
Tpr2g3539 681 MobiDBLite consensus disorder prediction 24 51 - -
Tpr2g3539 681 MobiDBLite consensus disorder prediction 630 681 - -
Tpr2g3539 681 Gene3D - 150 407 IPR038718 -
Tpr2g3539 681 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY A-LIKE PROTEIN 1 4 659 IPR030101 GO:0006281|GO:0031297|GO:0036310
Tpr2g3539 681 Pfam SNF2-related domain 191 456 IPR000330 GO:0005524|GO:0140658
Tpr2g3539 681 SMART ultradead3 173 366 IPR014001 -
Tpr2g3539 681 SMART helicmild6 503 586 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g3539 Tpr-Chr2 38580872 38589300 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g3539 443 635 RAD5 or RAD16-like Gene Family AT1G02670 29.146 9.95e-18 85.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Tpr2g3539 SNF2_N 3.7e-28 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g3539 K14440 - gmx:100797654 1072.38
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g3539 2 38580872 38589300 Tpr2g3539 2 38580872 38589300 ECH