Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g3528 ATGGATATAGATTCTGCAAGTATTCAGCCAGTAGTAGAAGATACTGGAAGCAAGCAAGAAGGTTCAGAGGAGAACAAAGCTAAGGATGAAAAAACCAATACAGTACCTTTATACAAGCTTTTCTCATTTGCTGATCCTTTGGATCGTTTATTGATGTTTGTTGGGACTATTGGTGCTATTGGGAATGGAATCTCCCCGCCCTTGATGATTTTATTATTTGGAAATATGATCAATGCATTTGGAGGATCATCAAGCACCAAAGAAGTTGTTGATGAAGTTTCCAAGGTGTCCTTGAAATTCGTATACTTGGCTGCGGGTACCTTTGTTGCGTCTTTTTTGCAATTGACTTGCTGGATGATCACTGGTGAGAGACAGGCTGCAAGAATTAGAGGTTTATACCTACAAACTATTTTGAGGCAAGATGTGAGTTTCTTTGATAAGGAAACTAATACTGGTGAGGTTGTCGGAAGAATGTCTGGTGATACCGTTCTTATTCAAGATGCCATGGGTGAGAAGGTGGGACAGTTTCTACAGTTATTCGCTACATTCTTAGGAGGTTTTGTCATAGCATTCATCAAAGGATGGCTTTTAACTGTTGTCATGATGTCTGTTCTTCCACTTCTTGTCTTGTCTGGTGCCATGATGAGCATGGTTATTACAAAAGCATCATCCAGTGGACAAACAGCTTATTCTAAAGCAGCAACTGTAGTAGAGCAGACAATTGGTTCTATCAGAACTGTTGCATCGTTCACCGGAGAGAAACAAGCCATAGCTAAATATGACCAGTCCTTAATTGATGCTTACAAAACTGTAGTGAAAGAGGCCCTAGCTTCGGGTGTGGGGTTTGGTTCACTCTACTTTGTTATTATTGCTAGTTATGGTTTGGCAGTATGGTTTGGTGCAAAAATGATAATAGAGAAAGGTTATACAGGAGGGGAAGTTGTGACTATAATTTTTGCTGTATTGACTGGTTCCATGTCTCTGGGACAGGCATCTCCAAGCTTGAGTGCTTTTGCTGCAGGACAAGCTGCAGCATTTAAGATGTTCGAAACGATTAAAAGGAAGCCAGAAATTGATGCTTATGACACAACCGGGCGAAAGCTTGATGATATTCGCGGAGACATAGAGCTTAGGGAGGTTTGCTTTAGTTATCCTACAAGGCCAGATGAACTGATATTCAATGGATTCTCTCTTGCAATACCAAGTGGGACTACTGTAGCTTTGGTAGGGCAAAGTGGGAGTGGAAAATCCACGGTTGTCAGTTTGATAGAGAGATTTTACGATCCACAAGCTGGTGAAGTTCTCATTGATGGTATCAACCTCAAAGAATTTCAACTTAAATGGATCCGACAGAAAATCGGCCTAGTCAGTCAGGAACCAGTTCTCTTTACTTGTAGCATTAAGGAGAATATTGCCTATGGTAAGGATGGTGCAACCGATGAAGAAATCAGAGCTGCAGCAGAACTTGCTAATGCCACCAAATTTATAGATAAACTTCCTCAGGGACTAGACACAATGGTTGGTGAGCATGGAACTCAGCTCTCCGGAGGTCAAAAGCAAAGAGTTGCAATTGCAAGGGCAATTCTGAAAGATCCAAGAATCCTACTTCTTGATGAAGCTACAAGTGCGCTTGATGCGGAATCTGAAAGAGTAGTACAAGAGGCATTGGACAGAATAATGGTAAACCGAACAACTGTCATTGTAGCTCACCGCTTAAGCACCATAAAGAATGCTGATACCATTGCGGTTGTTCATCAAGGAAAAATAATTGAAAGAGGTTCACATGCTCATCTCACAAGGGACCCCGATGGAGCCTATAGCCAGCTCATTAGGCTGCAAGAAATGAAGGGGTCAGAACAGAATGATGCAAATGACACAAACAACTCAAACAGTATAGTGCTATCTGAAAGACGATCTAGTCATAGATCTTTATCCTTGAGATCTATAAGTCAAGTATCATCTGGAGGTGGAGACAGCGGTCGTCACTCATTCACAGCGTCATTTGGTGTGCCGACCACAATGGTTGGCTTCTCAGAAACCGCGGATGGTGGAACTCAAGCTCCTCCTTCGAAAGTTTCTTCACCACCAGAAGTGCCACTTTATCGCCTGGCCTATTTAAACAAGACAGAAGTTCCCGCCTTACTTATAGGGACAATAGCTGCAGTGCTGCACGGTGTAATATTACCGGTTTTCGGCCTCTTGCTTTCGAAAATGATAAGTATTTTCTACGAGCCAGCTGACGAACTTCGTCACGATGCAAAGATTTGGGCGTCAGTATTTGTTGGGCTTGGTGTTGCGTCATTATTCATTTTTCCAACTAGATTCTACTTTTTTGGCATTGCTGGAGGTAAGTTGATCAAAAGAATAAGGAAAATGTGTTTTGAGAAGGTAATTCACATGGAAGTAAGTTGGTTTGATGAAGCTGAGCATTCAAGTGGAGCAATTGGAGCAAGGCTCTCAACCGATGCAGCTTCGATTCGAGCTTTGGTTGGTGATGCACTCGGATTACTGGTTGAAAATATTGCTACAGCTATAACTGGCTTGGTAATTGCTTTTGTAGCCAGCTGGCAGCTTGCTCTTGTAATCCTTGCTTTGGTGCCTCTACTAGCACTTAATGGATTTTTGCAAGTGAAGTTCTTGAAAGGGTTCAGCAATGATTCAAAGAAATTGTATGAGGAAGCAAGTCAAGTGGCGAACGATGCAGTGGGAAGTATAAGAACAGTTGCTTCTTTCTGTTCTGAAGAGAAGGTGATGGACCTATATAAGCAAAAATGTGAGGGACCAATTAAGACAGGCATAAGGCGAGGGATAGTAAGCGGATTTGGTTTTGGGATATCATTTTTCATGTTGTATGCAGTTTATGCAACCAGTTTTTATGCTGGAGCGCGTCTCGTTGAGGATGGAAAATCTTCATTCTCGGACGTTTTTCGTGTATTTTTTGCTCTAAGCATGGCAGCTATAGGACTCTCTCAATCCGGGTCGATGGTATCTGATTCAACTAAGGCAAAAAGTGCAGCTGCTTCCATATTTGCTATTCTTGACAGGAAATCACTCATAGATCCAAATGATGAATCAGGAATGACATTGGAAGAAGTCAAGGGTGAAATTGAGTTAAAGCATGTCAGTTTCAAGTATCCTACTAGACCCGATGTTCAAATATTCAGAGATCTTAGCTTGACTATTCACACTGGCAAGACAGTTGCACTTGTTGGAGAAAGTGGAAGCGGAAAATCAACAGTGATCTCGTTAATACAAAGATTTTATGATCTAGATTCAGGTCACATTACACTTGATGGAAAAGAAATCCAAAGTCTACAAGTGAAATGGCTAAGACAACAAATGGGTCTAGTAAGCCAAGAGCCTGTTCTTTTCAATGATACAATCAGAGCCAATATTGCATATGGAAAAGGAGGAGATGCATCAGAAGCAGAGATTATAGCTGCAGCAGAATTAGCAAATGCTCACAAGTTTATTAGTAGTTTGCAAAAGGGTTATGATACAATAGTAGGAGAGAGAGGAGTTCAATTATCCGGGGGACAGAAACAGCGTGTGGCAATTGCGAGAGCTATAGTGAAGAATCCAAAAATACTATTACTAGATGAAGCAACTAGTGCACTTGATGCTGAGTCTGAGAAGGTGGTTCAAGATGCACTTGATCGTGTTATGGTGGAGCGGACGACAATAATAGTAGCTCATAGGTTATCAACTATTAAGGGTGCAGATTTAATTGCAGTAGTTAAGAATGGTGTTATAGCAGAAAAAGGAAAACATGAAGCATTGCTCCATAAGGGTGGTGACTATGCTTCTTTAGTAGCATTACACATAAGTGCTTCTACATCTTAG 3843 0.4137 MDIDSASIQPVVEDTGSKQEGSEENKAKDEKTNTVPLYKLFSFADPLDRLLMFVGTIGAIGNGISPPLMILLFGNMINAFGGSSSTKEVVDEVSKVSLKFVYLAAGTFVASFLQLTCWMITGERQAARIRGLYLQTILRQDVSFFDKETNTGEVVGRMSGDTVLIQDAMGEKVGQFLQLFATFLGGFVIAFIKGWLLTVVMMSVLPLLVLSGAMMSMVITKASSSGQTAYSKAATVVEQTIGSIRTVASFTGEKQAIAKYDQSLIDAYKTVVKEALASGVGFGSLYFVIIASYGLAVWFGAKMIIEKGYTGGEVVTIIFAVLTGSMSLGQASPSLSAFAAGQAAAFKMFETIKRKPEIDAYDTTGRKLDDIRGDIELREVCFSYPTRPDELIFNGFSLAIPSGTTVALVGQSGSGKSTVVSLIERFYDPQAGEVLIDGINLKEFQLKWIRQKIGLVSQEPVLFTCSIKENIAYGKDGATDEEIRAAAELANATKFIDKLPQGLDTMVGEHGTQLSGGQKQRVAIARAILKDPRILLLDEATSALDAESERVVQEALDRIMVNRTTVIVAHRLSTIKNADTIAVVHQGKIIERGSHAHLTRDPDGAYSQLIRLQEMKGSEQNDANDTNNSNSIVLSERRSSHRSLSLRSISQVSSGGGDSGRHSFTASFGVPTTMVGFSETADGGTQAPPSKVSSPPEVPLYRLAYLNKTEVPALLIGTIAAVLHGVILPVFGLLLSKMISIFYEPADELRHDAKIWASVFVGLGVASLFIFPTRFYFFGIAGGKLIKRIRKMCFEKVIHMEVSWFDEAEHSSGAIGARLSTDAASIRALVGDALGLLVENIATAITGLVIAFVASWQLALVILALVPLLALNGFLQVKFLKGFSNDSKKLYEEASQVANDAVGSIRTVASFCSEEKVMDLYKQKCEGPIKTGIRRGIVSGFGFGISFFMLYAVYATSFYAGARLVEDGKSSFSDVFRVFFALSMAAIGLSQSGSMVSDSTKAKSAAASIFAILDRKSLIDPNDESGMTLEEVKGEIELKHVSFKYPTRPDVQIFRDLSLTIHTGKTVALVGESGSGKSTVISLIQRFYDLDSGHITLDGKEIQSLQVKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDASEAEIIAAAELANAHKFISSLQKGYDTIVGERGVQLSGGQKQRVAIARAIVKNPKILLLDEATSALDAESEKVVQDALDRVMVERTTIIVAHRLSTIKGADLIAVVKNGVIAEKGKHEALLHKGGDYASLVALHISASTS* 1281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g3528 1280 Gene3D - 1026 1278 IPR027417 -
Tpr2g3528 1280 MobiDBLite consensus disorder prediction 1 30 - -
Tpr2g3528 1280 ProSitePatterns ABC transporters family signature. 514 528 IPR017871 GO:0005524
Tpr2g3528 1280 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 367 613 IPR027417 -
Tpr2g3528 1280 SMART AAA_5 402 574 IPR003593 -
Tpr2g3528 1280 SMART AAA_5 1063 1256 IPR003593 -
Tpr2g3528 1280 Pfam ABC transporter 394 542 IPR003439 GO:0005524
Tpr2g3528 1280 Pfam ABC transporter 1055 1204 IPR003439 GO:0005524
Tpr2g3528 1280 ProSitePatterns ABC transporters family signature. 1176 1190 IPR017871 GO:0005524
Tpr2g3528 1280 SUPERFAMILY ABC transporter transmembrane region 39 359 IPR036640 GO:0005524|GO:0016021
Tpr2g3528 1280 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1025 1273 IPR027417 -
Tpr2g3528 1280 Gene3D - 373 631 IPR027417 -
Tpr2g3528 1280 SUPERFAMILY ABC transporter transmembrane region 702 1020 IPR036640 GO:0005524|GO:0016021
Tpr2g3528 1280 PANTHER - 11 1276 - -
Tpr2g3528 1280 Pfam ABC transporter transmembrane region 714 984 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tpr2g3528 1280 Pfam ABC transporter transmembrane region 52 326 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tpr2g3528 1280 CDD ABC_6TM_Pgp_ABCB1_D2_like 704 1019 - -
Tpr2g3528 1280 CDD ABC_MTABC3_MDL1_MDL2 375 613 - -
Tpr2g3528 1280 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1036 1273 IPR003439 GO:0005524
Tpr2g3528 1280 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 715 1001 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tpr2g3528 1280 CDD ABC_6TM_Pgp_ABCB1_D1_like 52 336 - -
Tpr2g3528 1280 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 53 340 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tpr2g3528 1280 PANTHER ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL 11 1276 - -
Tpr2g3528 1280 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 375 611 IPR003439 GO:0005524
Tpr2g3528 1280 CDD ABC_MTABC3_MDL1_MDL2 1036 1271 - -
Tpr2g3528 1280 Gene3D ABC transporter type 1, transmembrane domain 98 946 IPR036640 GO:0005524|GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g3528 Tpr-Chr2 38502273 38508025 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g3528 26 1274 Calmodulin-binding Proteins AT2G36910 45.064 0.0 1065
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g3528 K05658 - gmx:100800293 2003.79