Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g3517 ATGACTAATACTCATGATAGTATCACTAATGTTGACATAAACAGTCTCAGTGATGAAGGTTCTGTCAAGCATTTCTCTGCTAACTGGCCAATGTCAGAGACCCCTGGTGCAGCTAAATTTGCCATCCTGTATAATGGAAGTATGTGTGTCTATGAAGGAATTCCTGCAGAAAAGATGCATGAAATAATGTTGATGGCTGCTACCAATGCCAAGTCTTCTGAAATGAAGAGTGGAATTTCCTTCACTTCTCTCTTTTCCACTACTAACAACCCTCCTTCTCCTCAAGGTACCTCTGACAATTTGCCTTCTCCTCAATCAGTCTGTTTTCCTGCTGCTGAGAAGACTTCCATTTGCAGGATGCAAGAATTTCCAATAGCACGCAGACAGTCACTTCAAAGTTTTCTTGAGAAGAGAAGAATGAGGGTACGTAGCAAAGCACCTTATACCTCTTCAACATCAAAAGAAGCTAACAACATCGAAAACAACTTCAACCCAACATTGATGCCACTTGAGGGCAAGTAG 522 0.4138 MTNTHDSITNVDINSLSDEGSVKHFSANWPMSETPGAAKFAILYNGSMCVYEGIPAEKMHEIMLMAATNAKSSEMKSGISFTSLFSTTNNPPSPQGTSDNLPSPQSVCFPAAEKTSICRMQEFPIARRQSLQSFLEKRRMRVRSKAPYTSSTSKEANNIENNFNPTLMPLEGK* 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g3517 173 MobiDBLite consensus disorder prediction 145 165 - -
Tpr2g3517 173 SMART tify_2 33 68 IPR010399 -
Tpr2g3517 173 MobiDBLite consensus disorder prediction 145 173 - -
Tpr2g3517 173 Pfam Jas motif 124 148 IPR018467 -
Tpr2g3517 173 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 12 164 IPR040390 -
Tpr2g3517 173 Pfam tify domain 35 67 IPR010399 -
Tpr2g3517 173 ProSiteProfiles Tify domain profile. 33 68 IPR010399 -
Tpr2g3517 173 PANTHER DIVERGENT CCT MOTIF PROTEIN 12 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g3517 Tpr-Chr2 38449489 38452333 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g3517 39 157 Tify Gene Family AT5G20900 41.322 1.20e-18 77.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Tpr2g3517 tify 4e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g3517 - K13464 gmx:100306655 150.214