Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g3516 ATGTCAACAACAGAAACTCCTCCTCCTTTCCAAGAAGCAGCACGATGTGTTGTCTGTAGTTGCAGTTTCAACACCTTCAGAAGACGGCATCACTGCCGATCCTGTGGGAGAACATTGTGCAGTGAACATTCATCTGATCAAATGGCTTTACCACAATTTGGCATTTATTCCAATGTACGTGTATGTGCTGATTGTTTCAACAACCGATCTGGGAAGGGTGTACCACAAGCTTCGTCAGATGGAGTACACAGCGTAACAGATGCAGTTTCTGAGTTAGATATTGGTGCTTCAAAAAGAATACCAACTGCAGATAATAACCTTGCATCAGGCGTTAAAGAGTGTAAGTGTGGAATGCCTCTTTGCATTTGTGTAGCTTCTGCCCCTTCCTCTGATGCACTCCCCCAGGAGAAGTCCACCCCAGTTGTTACAGCTCCATCAAATCCTAAACCTAAGAAGACAGATAATGTTTCAAAAAATAAAAGCTCAAGTTCCACAAACAAGTTTAGTTCTACGTTTAACCCTGGAATTGTATCCGCTGGTGCCTCAAGCAATCCCCAGATTGATTATGAAGTTAATGGAGAGGGTTTACGAGAAGCAATAAAAAATGGTGACATTGCTGCTGTCAAAAAACTTCTTAATGAGGGTGTAGATGCAAATTACAGAGACAAGCAAGGACTGTCTTTATTGCATTTGGCTGCGGTTTTCAATCAAACTGATATAGTTTTCATTCTCATGGATGCGGGGGCAAGTCTGGAGTATAAAAATGCTCAAGGAGAAACGCCTTTAGATTGTGCTCCAGCTACACTGCAATACAAAATGCGAAAGAAGATTGAAGAAAGTGGAGCAATGGACCAAAGGATTTGA 864 0.4201 MSTTETPPPFQEAARCVVCSCSFNTFRRRHHCRSCGRTLCSEHSSDQMALPQFGIYSNVRVCADCFNNRSGKGVPQASSDGVHSVTDAVSELDIGASKRIPTADNNLASGVKECKCGMPLCICVASAPSSDALPQEKSTPVVTAPSNPKPKKTDNVSKNKSSSSTNKFSSTFNPGIVSAGASSNPQIDYEVNGEGLREAIKNGDIAAVKKLLNEGVDANYRDKQGLSLLHLAAVFNQTDIVFILMDAGASLEYKNAQGETPLDCAPATLQYKMRKKIEESGAMDQRI* 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g3516 287 SUPERFAMILY FYVE/PHD zinc finger 9 69 IPR011011 -
Tpr2g3516 287 Gene3D - 174 286 IPR036770 -
Tpr2g3516 287 Pfam Ankyrin repeats (3 copies) 198 265 IPR002110 GO:0005515
Tpr2g3516 287 ProSiteProfiles Ankyrin repeat profile. 224 256 IPR002110 GO:0005515
Tpr2g3516 287 CDD FYVE_scVPS27p_like 9 66 - -
Tpr2g3516 287 PANTHER VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 27 1 280 - -
Tpr2g3516 287 ProSiteProfiles Ankyrin repeat region circular profile. 224 255 - -
Tpr2g3516 287 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 72 IPR013083 -
Tpr2g3516 287 Pfam FYVE zinc finger 11 68 IPR000306 GO:0046872
Tpr2g3516 287 ProSiteProfiles Ankyrin repeat profile. 196 223 IPR002110 GO:0005515
Tpr2g3516 287 SUPERFAMILY Ankyrin repeat 196 272 IPR036770 -
Tpr2g3516 287 MobiDBLite consensus disorder prediction 134 167 - -
Tpr2g3516 287 SMART ANK_2a 224 253 IPR002110 GO:0005515
Tpr2g3516 287 SMART ANK_2a 191 220 IPR002110 GO:0005515
Tpr2g3516 287 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 10 70 IPR017455 -
Tpr2g3516 287 SMART fyve_4 2 71 IPR000306 GO:0046872
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g3516 203 282 MAP Kinase Kinase Kinase AT3G58760 36.250 2.01e-09 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g3516 - - gmx:100814367 463.381