Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g3476 ATGTCGACTTCATCAGAATATTCTGCGTTTTCCGCCAACAACAACAACAACAACAAATCATCAACGTTTTCTCAAACTTGTAATCTATTGAGCCAATTCATCAAAGACAAGGGTACTTTCGGAACTCTCTCCCTTCACAATCCATCCACCCTCACCCTCACACCAAATGTGTCTCCTGATTCATCTTGTTCTGGAACAACAACCATGGACTTCTTTCCAACAAAAGAAGAAGAACTTAAAACTGTAGATTTTTTATCTACCAGTGGATTTAACTCTATTGTTGCTCAAGAGACTAAAACTGCACAATTGACTATGTTTTATAATGGACAAGTTATTGTGTTGGATGATTTTCCTGCTCAGAAAGTTGAGGAGCTTAAGTCATTTGCAAAAACTAAAACTCAGATTCAACCTTCAATTAATCCTAATATCATCACTCAACCATCTTCCACACTGATTATTGGAGAACCAACAATTGCTAGAAAAGCTTCACTTCTTCGATTCATGGAAAAGAGGAAAGATAGAGTTACTTCCAAATCACCATACTCTAAACCAAGCAATCCATCTCTGATGCAGTAA 576 0.3698 MSTSSEYSAFSANNNNNNKSSTFSQTCNLLSQFIKDKGTFGTLSLHNPSTLTLTPNVSPDSSCSGTTTMDFFPTKEEELKTVDFLSTSGFNSIVAQETKTAQLTMFYNGQVIVLDDFPAQKVEELKSFAKTKTQIQPSINPNIITQPSSTLIIGEPTIARKASLLRFMEKRKDRVTSKSPYSKPSNPSLMQ* 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g3476 191 ProSiteProfiles Tify domain profile. 96 131 IPR010399 -
Tpr2g3476 191 Pfam Jas motif 158 182 IPR018467 -
Tpr2g3476 191 SMART tify_2 96 131 IPR010399 -
Tpr2g3476 191 PANTHER PROTEIN TIFY 10A 17 182 - -
Tpr2g3476 191 Pfam tify domain 99 125 IPR010399 -
Tpr2g3476 191 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 17 182 IPR040390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g3476 Tpr-Chr2 38091550 38093332 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g3476 1 181 Tify Gene Family AT1G19180 36.087 7.60e-30 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Tpr2g3476 tify 9.2e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g3476 K13464 - gmx:100802800 138.658
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g3476 2 38091550 38093332 Tpr2g3476 2 38091550 38093332 ECH
Tpr2g3476 2 38091550 38093332 Tpr5g1054 5 21032024 21034435 PCT