Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g3471 ATGGCAGAAGAGGAACCAAAGGCTCTTAACTATATTCCAGAGGTTATATTAAAGAAAAGGAAAAACAGTGAAGCATGGGCGTTGAGAAAAAAGGACCAATTGCAGAAAAAAGATTTCCAGTTGAGGAAATCCAAGGACTTTATTAAAAAGCCTGAGGATTTTATTCTCGAATATCGTAACAGGGAGGTCGACCTCATTCGAATGAAAAGGAGGGTCAAGAGGAGACGGGCAGAAAAATCAACCCCATGCAACAAGCCCATAATAGTCATTCGTATACAGGGGAAACAAGACATGCATCCTACAACCAGAAAGCACTTATTCAGTTTGGGATTGAGAAGAATATTCAGTGCTGTCTTTGTTAAACCAACTGATGGAGTGATGGCCAAGCTGGCAAGAGTTGAACCATATGTTACCTATGGATATCCAAATCTTAAAAACATAAAGGAGCTAATTTACAAGAAGGGACATGCAAAAATAGATAGGCGAAAAGTTCCTTTGACAGATAATAACCTTATTGAGCAGGAATTAGGAAAGTTTGGTATCGTTTGCATAGAAGACATGGTTCATCAAATTGAAAATGTTGGTCCACACTTTAAGGAAGTTGTCAGATTTATGTGGCCCTTTGAACTGAACAAGCCAGCTGACGGATTGAAAGGATTGAAAAATCGTTTCAAGATTGGTGGAGATTCAGGGGACCGTGAGGATCTCATCAACGAGCTCATCAATAAAATGAATTAA 738 0.3902 MAEEEPKALNYIPEVILKKRKNSEAWALRKKDQLQKKDFQLRKSKDFIKKPEDFILEYRNREVDLIRMKRRVKRRRAEKSTPCNKPIIVIRIQGKQDMHPTTRKHLFSLGLRRIFSAVFVKPTDGVMAKLARVEPYVTYGYPNLKNIKELIYKKGHAKIDRRKVPLTDNNLIEQELGKFGIVCIEDMVHQIENVGPHFKEVVRFMWPFELNKPADGLKGLKNRFKIGGDSGDREDLINELINKMN* 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g3471 245 Pfam Ribosomal protein L30p/L7e 88 137 IPR016082 -
Tpr2g3471 245 TIGRFAM uL30_euk: 60S ribosomal protein uL30 13 245 IPR005998 GO:0000463|GO:0003735|GO:0022625
Tpr2g3471 245 Pfam Ribosomal L30 N-terminal domain 12 75 IPR012988 -
Tpr2g3471 245 CDD Ribosomal_L7_archeal_euk 87 245 IPR035808 -
Tpr2g3471 245 PANTHER 60S RIBOSOMAL PROTEIN L7-1 3 245 - -
Tpr2g3471 245 PANTHER 60S RIBOSOMAL PROTEIN L7 3 245 IPR039699 -
Tpr2g3471 245 SUPERFAMILY Ribosomal protein L30p/L7e 88 245 IPR036919 -
Tpr2g3471 245 Gene3D - 87 245 IPR036919 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g3471 Tpr-Chr2 38064243 38067215 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g3471 1 245 Cytoplasmic Ribosomal Protein Gene Family AT1G80750 53.846 4.47e-84 249
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g3471 K02937 - gmx:100306107 361.688