Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g3453 ATGAATGGAAGAAACAGGCATCCTTTTACTCCAACTCAGTGGCAAGAGCTTGAACATCAAGCTCTTATCTACAAATACATGGCTTCTGGTATCTCCATTCCACCTGATCTTCTACTCACCATCAAAAGAAGCTACTTAGACTCTTCAAGGCTCTTACCTCACCACTCTCAACACTTTGGGTGGAACTATTTACCAATGGGATTAGGAAGAAAAATAGACCCTGAACCAGGAAGATGTAGAAGAACAGATGGAAAGAAATGGAGGTGTTCAAAAGAAGCATATCCAGATTCAAAGTACTGTGAGAGGCACATGCATAGAGGGAAAAACCGTTCAAGAAAGCCTGTGGAAGTTTTGAAAACAACAACAACAAACACAGATTCTGCAGCTGCTACTTCATCAATCTTATCAATGACTAAAAATAGTAGTTTTGATCCTGATCATAATACTGCAGCACTAAACCCAACAACTCATGACAGTACTTACCATTACCCTCAACACTCTTCTTATGCTTCTTCCCATCTTAACCACTCTTTCCTTTACCATAACCCTCCATCTTCAAGGCCTAATTTCTCATTTCAAGACAACACTAGTGCTGCTCCCATGTTTCTTGACAGTACTGGTTCTTCCTCTCACAATAACAACAACAACAACACTGATTGCAGGTATGTTTATGGACTGAAAGAGGAGGTGGATGAGCATGCTTTCTTCACTGAACCTTCTGGAACTATGAGAAGTTTATCAGCTTCATCAATGGATGATTCATGGCAACTCACACCACTTACTATAAGTTCATCTTCCTCTTCAAAACAGAGGAATTGCTCTGGTTTATCCAATGACAATGAGTACTCTTACTTGCAACTTCAAAGCCTAAGTAACAACAATAACAACTCAAAACAACCACAGCAACAAGATCAAAGGTTTTACATCTCAGGTAGTGAAGAAACATTCATGAAACAAGAAAAAGAAGAACCTCAGAAGATTTTCCATCGTTTCTTTGATGAATGGCCACCCAAAAGCAGTAGAAATTCATGGCTTGATTTGGATGATAAATCATCCACCACTCAGCTTTCAATTTCCATTCCTACAGCACATCATGATTTCACAACTTTTAGTTCCACAAACCAACGAGATGGTTAA 1137 0.3914 MNGRNRHPFTPTQWQELEHQALIYKYMASGISIPPDLLLTIKRSYLDSSRLLPHHSQHFGWNYLPMGLGRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVEVLKTTTTNTDSAAATSSILSMTKNSSFDPDHNTAALNPTTHDSTYHYPQHSSYASSHLNHSFLYHNPPSSRPNFSFQDNTSAAPMFLDSTGSSSHNNNNNNTDCRYVYGLKEEVDEHAFFTEPSGTMRSLSASSMDDSWQLTPLTISSSSSSKQRNCSGLSNDNEYSYLQLQSLSNNNNNSKQPQQQDQRFYISGSEETFMKQEKEEPQKIFHRFFDEWPPKSSRNSWLDLDDKSSTTQLSISIPTAHHDFTTFSSTNQRDG* 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g3453 378 PANTHER GROWTH-REGULATING FACTOR 5 3 354 - -
Tpr2g3453 378 ProSiteProfiles QLQ domain profile. 8 43 IPR014978 GO:0005524|GO:0005634|GO:0006355
Tpr2g3453 378 Pfam QLQ 8 41 IPR014978 GO:0005524|GO:0005634|GO:0006355
Tpr2g3453 378 SMART QLQ_2 7 43 IPR014978 GO:0005524|GO:0005634|GO:0006355
Tpr2g3453 378 ProSiteProfiles WRC domain profile. 73 117 IPR014977 -
Tpr2g3453 378 Pfam WRC 74 116 IPR014977 -
Tpr2g3453 378 PANTHER - 3 354 IPR031137 GO:0005634|GO:0006351|GO:0032502
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g3453 Tpr-Chr2 37918061 37920402 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g3453 5 116 GRF Transcription Factor Family AT3G13960 70.435 1.51e-53 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Tpr2g3453 WRC 8e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g3453 - - mtr:MTR_4g125490 634.024
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g3453 2 37918061 37920402 Tpr2g3453 2 37918061 37920402 ECH
Tpr2g3453 2 37918061 37920402 Tpr5g0822 5 14871753 14875116 PCT