Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g3429 ATGTTGGGTGACGCCACAAACTGGGACGAAGATGCATACAGAGAAACCCTATTGAAGGAAAGAGAGATTCAAACACAAACCGTTTTCAGAACAGCTTGGGCTCCATCTCAATCTCAAACCCCTAATCTCAACTCTCTCATCGTTGCTTCCAGTGACGGTTCCATCGCCTCTTACTCCATCCCTTCTACCATCTCTGCTTCCAAGCTCAAAAATCCATTTGGTTTTATCAATACTGATGAGGATAATTTATTGGCTGAGCCAGATTGCTTCTTTCAAGGGCATCATGGACCTGCATATGATGTCAAATTCTATGGTGATGATGAAAATGCATTGTTGCTGAGTTGTGGTGATGATGGGCGGATTCGAGGATGGAGATGGAACGAACTTACAAGCTCAAAATATAATATTTCTTCAGAAGGAAATGATATCAAGCCTATCCTTGATGTGGTAAATCCTCAACATAAAGGTCCTTGGGGTTCACTTTCACCTCTCCCTGAGAATAATGCTATTGCCATTAATACTCAGGTGGGATCTGTTTTTGCTGCGTCTGGCGATTCTTGTGCATATTGCTGGGATGTGGAAACTGGTAAATTAAAAATGGTATTCAAGGGTCATTCTGATTACTTGCATTGTATTGATGCCCGCAACTCATCCAATCAGATCATAACAGGTTCGGAGGACGGGACAACACGAATTTGGGATTGCAAAAGTGGAAAGTGTGTCCAAGTGATTGATCCAGCAAAACATTTGAAGTTAAAAGGACCTGTTTCATGGGTTGGCTCTGTTGCTTTAGATGCAAGTGAGAGCTGGTTGGCATGCAGTAGTGGACGTAATATATCACTTTGGAACCTTCCTGCTTCAGAGTGCACATTAAATTTCTCCACACAAGCCTCTGTACAAGACATGTTATTTGACAATAATCAGATTCTGACAGTTGGTGCAGATCCTATACTCAATCGCTTTGACATGAACGGTGTGATCCTTTCACAAATACCATGTGCTCCTCCGTCAGCTTTTTCTATCTCCTTACATCCAGCAGGGGTTATTGCTGTTGGAGGTTACGGATGTCTTGTGGATGTTATCTCGCAATTTGGCAGCCACATGTGTACATTTCATTGCCAATGTCTTTAG 1131 0.4244 MLGDATNWDEDAYRETLLKEREIQTQTVFRTAWAPSQSQTPNLNSLIVASSDGSIASYSIPSTISASKLKNPFGFINTDEDNLLAEPDCFFQGHHGPAYDVKFYGDDENALLLSCGDDGRIRGWRWNELTSSKYNISSEGNDIKPILDVVNPQHKGPWGSLSPLPENNAIAINTQVGSVFAASGDSCAYCWDVETGKLKMVFKGHSDYLHCIDARNSSNQIITGSEDGTTRIWDCKSGKCVQVIDPAKHLKLKGPVSWVGSVALDASESWLACSSGRNISLWNLPASECTLNFSTQASVQDMLFDNNQILTVGADPILNRFDMNGVILSQIPCAPPSAFSISLHPAGVIAVGGYGCLVDVISQFGSHMCTFHCQCL* 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g3429 376 SUPERFAMILY WD40 repeat-like 39 363 IPR036322 GO:0005515
Tpr2g3429 376 PANTHER THO COMPLEX SUBUNIT 6 HOMOLOG 9 373 IPR042626 -
Tpr2g3429 376 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 202 234 - -
Tpr2g3429 376 Pfam WD domain, G-beta repeat 252 283 IPR001680 GO:0005515
Tpr2g3429 376 Pfam WD domain, G-beta repeat 197 234 IPR001680 GO:0005515
Tpr2g3429 376 Pfam WD domain, G-beta repeat 91 124 IPR001680 GO:0005515
Tpr2g3429 376 Gene3D - 135 327 IPR015943 GO:0005515
Tpr2g3429 376 ProSiteProfiles Trp-Asp (WD) repeats profile. 202 243 IPR001680 GO:0005515
Tpr2g3429 376 Gene3D - 8 134 IPR015943 GO:0005515
Tpr2g3429 376 SMART WD40_4 245 283 IPR001680 GO:0005515
Tpr2g3429 376 SMART WD40_4 14 59 IPR001680 GO:0005515
Tpr2g3429 376 SMART WD40_4 195 234 IPR001680 GO:0005515
Tpr2g3429 376 SMART WD40_4 154 192 IPR001680 GO:0005515
Tpr2g3429 376 SMART WD40_4 84 125 IPR001680 GO:0005515
Tpr2g3429 376 SMART WD40_4 286 322 IPR001680 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g3429 123 239 Eukaryotic Initiation Factors Gene Family AT2G46290 29.915 1.83e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g3429 K13175 K03257 gmx:100806423 664.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g3429 2 37735933 37742105 Tpr2g3429 2 37735933 37742105 ECH