Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tpr2g3428 | ATGGCTGGACTTGCACCCGAGGGGTCACAGTATGATGCTGGCAAATATGACAAAAGAATGATTGATGTAATTGGCACGGATGAGGATTTTTGGACTGTTTCTGATGAGGCTTATGATAGTTTTGATGCTATGGGACTGCAAGAGAATCTCCTCAGGGGAATTTATGCATATGGTTTTGAAAAGCCATCAGCCATTCAGCAAAGGGGAATAGTCCCCTTCTGCAAGGGACTTGATGTTATTCAACAGGCTCAGTCTGGAACTGGAAAGACAGCAACTTTCTGCTCTGGTGTTCTGCAGCAACTTGACTACAGTTTGACTCAGTGCCAAGCCTTGGTTTTAGCTCCAACTCGGGAGCTTGCTCAGCAGATTGAGAAGGTTATGCGTGCACTTGGAGATTATCTAGGTGTTAAGGTGCATGCTTGTGTGGGAGGTACTAGTGTTCGTGAAGACCAACGTATTCTATCAAGTGGAGTTCATGTTGTGGTTGGTACTCCTGGTCGTGTGTTTGATATGCTGCGTAGACAGTCTCTTCACCCGGATAACATCAAGATGTTTGTGTTGGATGAGGCTGATGAGATGCTTTCTCGAGGGTTCAAAGATCAGATCTACGATATATTTCAACTGCTGCCAAATAAGATTCAGGTGGGAGTTTTCTCTGCTACAATGCCTCCTGAGGCACTTGAGATCACAAGAAAGTTTATGAACAAACCTGTGAGGATCCTTGTGAAGCGTGATGAGCTGACCTTGGAGGGTATTAAGCAGTTTTATGTCAATGTTGACAAAGAGGAATGGAAGCTGGACACACTCTGTGATCTTTACGAGACACTAGCCATCACTCAGAGTGTCATTTTTGTTAACACCAGAAGAAAAGTTGATTGGTTGACTGACAAGATGCGAAGCCGAGACCATACTGTCTCAGCTACTCATGGAGACATGGATCAGAATACCAGAGACATTATTATGCGTGAATTCCGTTCTGGGTCTTCTCGTGTTTTAATAACTACCGATCTCTTGGCACGTGGAATTGATGTCCAACAAGTGTCTTTGGTTATTAATTTTGATCTCCCTACACAGCCTGAGAACTATCTCCATCGTATTGGTCGTAGTGGACGGTTTGGTAGAAAAGGTGTTGCCATTAACTTCGTCACAAAGGATGATGAAACAATGCTGCATGATATCCAGAAGTTTTACAATGTGATAGTTGAGGAGCTGCCATCAAATGTTGCTGAGCTTCTCTGA | 1239 | 0.4383 | MAGLAPEGSQYDAGKYDKRMIDVIGTDEDFWTVSDEAYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQLDYSLTQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLHPDNIKMFVLDEADEMLSRGFKDQIYDIFQLLPNKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFVTKDDETMLHDIQKFYNVIVEELPSNVAELL* | 413 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tpr2g3428 | 412 | Gene3D | - | 248 | 412 | IPR027417 | - | |
Tpr2g3428 | 412 | Gene3D | - | 30 | 247 | IPR027417 | - | |
Tpr2g3428 | 412 | SMART | ultradead3 | 58 | 255 | IPR014001 | - | |
Tpr2g3428 | 412 | ProSiteProfiles | DEAD-box RNA helicase Q motif profile. | 39 | 67 | IPR014014 | GO:0003724 | |
Tpr2g3428 | 412 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 70 | 240 | IPR014001 | - | |
Tpr2g3428 | 412 | PANTHER | EUKARYOTIC INITIATION FACTOR 4A-2 | 25 | 412 | - | - | |
Tpr2g3428 | 412 | CDD | DEADc_EIF4A | 43 | 241 | - | - | |
Tpr2g3428 | 412 | PANTHER | RNA HELICASE | 25 | 412 | - | - | |
Tpr2g3428 | 412 | Pfam | Helicase conserved C-terminal domain | 265 | 373 | IPR001650 | - | |
Tpr2g3428 | 412 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 251 | 412 | IPR001650 | - | |
Tpr2g3428 | 412 | Pfam | DEAD/DEAH box helicase | 64 | 225 | IPR011545 | GO:0003676|GO:0005524 | |
Tpr2g3428 | 412 | ProSitePatterns | DEAD-box subfamily ATP-dependent helicases signature. | 186 | 194 | IPR000629 | - | |
Tpr2g3428 | 412 | SMART | helicmild6 | 292 | 373 | IPR001650 | - | |
Tpr2g3428 | 412 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 108 | 393 | IPR027417 | - | |
Tpr2g3428 | 412 | CDD | SF2_C_DEAD | 252 | 382 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Tpr2g3428 | Tpr-Chr2 | 37721443 | 37725496 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Tpr2g3428 | 1 | 412 | Eukaryotic Initiation Factors Gene Family | AT1G72730 | 87.923 | 0.0 | 753 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tpr2g3428 | K03257 | - | gmx:112999960 | 767.303 |