Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g3407 ATGATGAATAATATGTTACCACCACCTTATCATTCTTCTCTTATGTCTTTGGATCTTAATATTCAAGATCAAAACCATGAGGACCAACTTTCTAGTCCAAATTCTTCTAATTCATCATTTTCTTCTCTATCATCTTCATCATCATATCCTATTCTCTTAAACCACCCAGATCAAGTTCAACAACCATCTTATTACTTACCAAATGATCATCAAGAGGTTGAGAAGATTAATAGTATGGTCTCAAGTGGATCATGGGATAATAATTCAACTGGTGAAAACCATGAGATCATCAAAAGTAAACACAAGCTGACAATTAGATGGAAGAAAGAAGGAATTAATAATAATATTGAAGAAGTTAATCATCATCATGATGATGGTACTTCAGTGAAGTGGATGTCTTCAAAGATGAGAATGATGAGGAAGATGATAGACTCTGATCAAACTAGTGGCGGTTCTTCTAACATAGCAAGCAATTCAAAGCAAAAGTTTGAAGATCAAAAGCAACCACTTTCACCACTAGGAAGCAGCACCAATAATTATTCAAATCAAATTAGGGTTTGTTCTGATTGCAACACCACTAAGACCCCTCTTTGGAGGAGTGGACCAAGAGGCCCCAAGTCACTATGCAACGCATGTGGGATTAGACAAAGGAAGGCAAGACGTGCCATGGCATTGGCTGCAGCATCGGCAAATGGTACAACAGTAACTGCTGATCAGACATGTTCTGTGAAGAGAAAAAAGTTGCAGAAGAAAAAAGAGAATAAGTCCAAAATTGATTATTGTTCTACACATTTGAAAAAGAAGACCAAGTTTGAATCAGAACCATCTCATCAAACTAAAAAGGAGTTCATAACTTTTGAAGATTTGAGATTAAGTTTGAGTAAAAATTTGTCTGTTCAACAAGTTTTCCCTCAAGATGAAAAGGAAGAAGCTGCTATCCTTCTCATGGCTTTATCTTATGGACTAGTCCATGGTTGA 978 0.362 MMNNMLPPPYHSSLMSLDLNIQDQNHEDQLSSPNSSNSSFSSLSSSSSYPILLNHPDQVQQPSYYLPNDHQEVEKINSMVSSGSWDNNSTGENHEIIKSKHKLTIRWKKEGINNNIEEVNHHHDDGTSVKWMSSKMRMMRKMIDSDQTSGGSSNIASNSKQKFEDQKQPLSPLGSSTNNYSNQIRVCSDCNTTKTPLWRSGPRGPKSLCNACGIRQRKARRAMALAAASANGTTVTADQTCSVKRKKLQKKKENKSKIDYCSTHLKKKTKFESEPSHQTKKEFITFEDLRLSLSKNLSVQQVFPQDEKEEAAILLMALSYGLVHG* 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g3407 325 MobiDBLite consensus disorder prediction 144 177 - -
Tpr2g3407 325 CDD ZnF_GATA 186 216 IPR000679 GO:0006355|GO:0043565
Tpr2g3407 325 ProSitePatterns GATA-type zinc finger domain. 187 212 IPR000679 GO:0006355|GO:0043565
Tpr2g3407 325 ProSiteProfiles GATA-type zinc finger domain profile. 181 217 IPR000679 GO:0006355|GO:0043565
Tpr2g3407 325 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 9 325 - -
Tpr2g3407 325 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 182 221 - -
Tpr2g3407 325 Pfam GATA zinc finger 187 220 IPR000679 GO:0006355|GO:0043565
Tpr2g3407 325 SMART GATA_3 181 232 IPR000679 GO:0006355|GO:0043565
Tpr2g3407 325 MobiDBLite consensus disorder prediction 145 177 - -
Tpr2g3407 325 Gene3D - 181 227 IPR013088 GO:0006355|GO:0008270
Tpr2g3407 325 PANTHER GATA TRANSCRIPTION FACTOR 21-LIKE 9 325 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g3407 Tpr-Chr2 37556460 37558793 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g3407 128 325 C2C2-Gata Transcription Factor Family AT4G26150 45.327 4.11e-37 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Tpr2g3407 GATA 5.4e-17 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g3407 - - mtr:MTR_4g126350 357.451
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g3407 2 37556460 37558793 Tpr2g3407 2 37556460 37558793 ECH
Tpr2g3407 2 37556460 37558793 Tpr5g0732 5 12313258 12315233 PCT