Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g3399 ATGGAAGAAAGTGATCATGAAGAATGCAACACAGGTTTATGTCTTGGATTGGGAGGAGGACACGTGGCAAAAAAGGAGAAGAAGCAAAAATTAGTGAACAAACCTTTGATGGCTTGTTTTGACCTAGCTTTTGAGATTTCTCCTAAAGGAGAAGCCATGAACATATACAATAATCATAGCAACATCAAGAAGGGTGAAAGATTGAGCTTGGAGAGACAACAAAATTATCCGAATGTAACGTATAGCACCGATTCTGAAAACAACAACAACAATAACAATAACAACAACGATAGTAGAAAGAAACTGAGGCTCACAAAGGAACAATCAACCATCCTTGAGAACACCTTCAAGCTCCACAACACTCTTAATCCGGTCCAGAAACAATCACTTGCTGACCAATTGAATTTAAAGACTAGACAAATCGAAGTTTGGTTTCAAAATAGGAGAGCAAGGACGAAGCTGAAGCAGACAGAAGTGGATTATGAATTGTTGAAAAAACATTGTCAAAATCTAAGTGATGAGAATAGAAGATTGAAGAAGGAATTGCAGGAACTCAAACTTGTACAATCTCCATTATGCCCTCAACGTACTCCATCAAAACCCAAAATGTGCTCTTCTTGCGACCACAAATTGTTCAAGCTCAATGAACTAGAGAACAACAATTAA 666 0.3769 MEESDHEECNTGLCLGLGGGHVAKKEKKQKLVNKPLMACFDLAFEISPKGEAMNIYNNHSNIKKGERLSLERQQNYPNVTYSTDSENNNNNNNNNNDSRKKLRLTKEQSTILENTFKLHNTLNPVQKQSLADQLNLKTRQIEVWFQNRRARTKLKQTEVDYELLKKHCQNLSDENRRLKKELQELKLVQSPLCPQRTPSKPKMCSSCDHKLFKLNELENNN* 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g3399 221 Gene3D - 96 154 - -
Tpr2g3399 221 ProSitePatterns 'Homeobox' domain signature. 130 153 IPR017970 GO:0000981|GO:0006355
Tpr2g3399 221 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 10 213 - -
Tpr2g3399 221 MobiDBLite consensus disorder prediction 78 101 - -
Tpr2g3399 221 MobiDBLite consensus disorder prediction 78 98 - -
Tpr2g3399 221 SMART halz 155 197 IPR003106 GO:0006355|GO:0043565
Tpr2g3399 221 Pfam Homeobox associated leucine zipper 155 186 IPR003106 GO:0006355|GO:0043565
Tpr2g3399 221 ProSiteProfiles 'Homeobox' domain profile. 95 155 IPR001356 GO:0003677
Tpr2g3399 221 SMART HOX_1 97 159 IPR001356 GO:0003677
Tpr2g3399 221 SUPERFAMILY Homeodomain-like 77 156 IPR009057 -
Tpr2g3399 221 Pfam Homeodomain 99 153 IPR001356 GO:0003677
Tpr2g3399 221 CDD homeodomain 99 156 IPR001356 GO:0003677
Tpr2g3399 221 Coils Coil 147 188 - -
Tpr2g3399 221 PANTHER - 10 213 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g3399 Tpr-Chr2 37500942 37503022 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g3399 85 208 Homeobox Transcription Factor Family AT3G60390 58.140 4.75e-44 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Tpr2g3399 Homeodomain 7.3e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g3399 K09338 - gmx:100812222 234.572
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g3399 2 37500942 37503022 Tpr5g0725 5 12155792 12158041 PCT