Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g3343 ATGGACTCATCCTCTTCTTCACCCCCCACAAATACTAACAACACCTCCCTCGCTTTCTCTCTTTCCAATACTATTATTCCTTCACACTCTTCTTCTTCTTCCTCTTTTTTCCACTCCTTCACCACTTTTCCATCCTCAACACCACAACCTCTCACTCTCACAGGAAGCAACGCAGTGAACACATCACCGGATGCAACAGACGGTGGAACTACCAACCTCTCCATATTCACCGGCGGACATAAGTTTGAGGATTTCTTAGGAAGCACCGTCACAACAACAACCGCCACCACGTGTGCACCAACACAGCTTCATCAGTTTTCCACCGACTTATATGATTCGGAGCTGAAGAAAACAATATCAGCTTGTCTCCAAGGTGGTTACCCCGCCGAACCAAACTCCGAACCTCGGAAACTGTCTCCCAAGAAAACCGTTGATAACTTCGGCCAACGTACTTCTATCTATCGCGGCGTCACCCGGCATAGATGGACCGGGAGATATGAAGCACATCTATGGGACAATAGTTGCAGAAGGGAAGGACAAAGTAGAAAAGGAAGACAAGTTTATTTGGGTGGCTATGACAAGGAAGAGAAAGCAGCTAGAGCTTATGATCTTGCTGCTCTCAAGTACTGGGGTCCAACCACCACCACCAACTTTCCAATTTCCAACTATGAGAAGGAACTTGATGACATGAAGAACATGACTAGACAAGAGTTTGTTGCTTCACTCCGAAGGAAGAGCAGTGGTTTTTCAAGAGGAGCATCAATTTACAGAGGAGTAACAAGACACCATCAGCATGGTAGATGGCAGGCTAGAATAGGCAGAGTTGCCGGAAACAAAGACCTTTACCTTGGCACTTTCAGCACACAAGAAGAAGCTGCAGAAGCATATGATATAGCAGCAATCAAATTCAGAGGACTAAATGCAGTGACAAACTTTGACATGAGTCGCTACGACGTAAAAAGCATTGCAAATAGTTCTCTTCCCATAGGTGGTTTATCTAACAAGAACAACAAAAATTCAACAGATTCATCAGTATCAGAAATCAAACGCCTCGAACCAATTCAATCCGATGAAAGAGATCATCCATCTTCAGTTTCATCCACAACAACCTTAAGCTTCGCGATTCCTATCAAACAAGATCCTTCTTCAGATTACTGGTCCAACATTCTCGGATTCCATAATACTAGTAATAATAATAATTCTAGTGTTGTTACTACCACACCCTTCAACATGGATTTTTCTACTCATGCATCTGATAATCACGACGCAACGTTTTTCGGTGGATCAGGTATCTTAAATGTTCATCAACAAAATGGAAATGGAAATAATAGTTCTTCATCTGCATCTTCTTCAACAAGTAATTCAATTCCATATGCTACACCAATATTTTCTTTAAATAGTAATAGTAACAGTAACAGTAGTTATGATCAGAATGGAAATAACTGGATTGGACACACAATATTCCAAACACATGCAAAACAACCAAGTCTATTTCAAACACCAATATTTGGAATGGAATGA 1521 0.4162 MDSSSSSPPTNTNNTSLAFSLSNTIIPSHSSSSSSFFHSFTTFPSSTPQPLTLTGSNAVNTSPDATDGGTTNLSIFTGGHKFEDFLGSTVTTTTATTCAPTQLHQFSTDLYDSELKKTISACLQGGYPAEPNSEPRKLSPKKTVDNFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQVYLGGYDKEEKAARAYDLAALKYWGPTTTTNFPISNYEKELDDMKNMTRQEFVASLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGLNAVTNFDMSRYDVKSIANSSLPIGGLSNKNNKNSTDSSVSEIKRLEPIQSDERDHPSSVSSTTTLSFAIPIKQDPSSDYWSNILGFHNTSNNNNSSVVTTTPFNMDFSTHASDNHDATFFGGSGILNVHQQNGNGNNSSSSASSSTSNSIPYATPIFSLNSNSNSNSSYDQNGNNWIGHTIFQTHAKQPSLFQTPIFGME* 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g3343 506 CDD AP2 152 221 IPR001471 GO:0003700|GO:0006355
Tpr2g3343 506 ProSiteProfiles AP2/ERF domain profile. 153 219 IPR001471 GO:0003700|GO:0006355
Tpr2g3343 506 CDD AP2 254 315 IPR001471 GO:0003700|GO:0006355
Tpr2g3343 506 PRINTS Ethylene responsive element binding protein signature 154 165 IPR001471 GO:0003700|GO:0006355
Tpr2g3343 506 PRINTS Ethylene responsive element binding protein signature 295 315 IPR001471 GO:0003700|GO:0006355
Tpr2g3343 506 Pfam AP2 domain 255 305 IPR001471 GO:0003700|GO:0006355
Tpr2g3343 506 Pfam AP2 domain 153 211 IPR001471 GO:0003700|GO:0006355
Tpr2g3343 506 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 29 485 - -
Tpr2g3343 506 ProSiteProfiles AP2/ERF domain profile. 255 313 IPR001471 GO:0003700|GO:0006355
Tpr2g3343 506 SUPERFAMILY DNA-binding domain 254 315 IPR016177 GO:0003677
Tpr2g3343 506 Gene3D AP2/ERF domain 255 315 IPR036955 GO:0003700|GO:0006355
Tpr2g3343 506 Gene3D AP2/ERF domain 153 221 IPR036955 GO:0003700|GO:0006355
Tpr2g3343 506 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR BBM 29 485 - -
Tpr2g3343 506 SUPERFAMILY DNA-binding domain 152 221 IPR016177 GO:0003677
Tpr2g3343 506 SMART rav1_2 153 225 IPR001471 GO:0003700|GO:0006355
Tpr2g3343 506 SMART rav1_2 255 319 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g3343 Tpr-Chr2 36999182 37003466 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g3343 107 506 AP2-EREBP Transcription Factor Family AT5G57390 55.909 6.99e-149 431
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Tpr2g3343 AP2 3.8e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g3343 K09285 - gmx:100803558 614.764
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g3343 2 36999182 37003466 Tpr2g3343 2 36999182 37003466 ECH