Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g3320 ATGTCACCATCTTCTCCTCCACAACAACAATTCATATTCCGTTCTAAACTCCCAGACATTGAAATTCCAACTCATCTTCCATTACACTCTTACTGTTTCCAAAACCTCTCTCAATTCCATAACCGTCCATGCCTCATCAACGGCGACACCGGCGAAGTTCTCACTTACTCCGACGTCCATCTCACCGTCCGCAAAATTGCCGCCGGATTAAACACGATCGGAATCAATCAAGGTGATGTCATCATGCTCGTCCTCCGTAACTCTCCTCAATTCGCACTCACCTTTCTCGGCGCATCCTTCCGCGGCGCCGTCATCACCACCGCAAATCCTTTCTACACCTCATCGGAACTATCAAAACAAGCCACAGCAACAAAAACTAAACTCATCGTAACTCAATCCGCATATCTCAATAAAATCAACGATTTCGCAAAATTCAATAACATCAAAATCGTCTGCATAGATTCAGATTCATCATCGCCGTTACCGTCATCGGAAGAAGTTGTGGATTTCTCAGTTTTAACAAATGCTGATGAAAACGATGCACCGGAAGTTAAACTAACGCCTAACGACATCGTTGCGTTACCGTTTTCTTCAGGAACTTCAGGACTTCCTAAAGGTGTTATGTTAACACATGAAAATTTAGTTACAACTATATCACAGTTAGTTGACGGTGAAAATCCACACCAATATACTAACGGTGAGGATGTGTTACTCTGTGTGTTACCTATGTTTCATATCTATGCACTCAATTCAATTTTACTGTGTGGAATTCGTTGCGGTGCTGCGGTTTTAATTTTGGAAAAATTTGAGATTAAAACGTTATTGGAACTTATTGAAAAGTATAAAGTAACGGTTGCGTCATTTGTGCCACCAATTGTGTTGGCGTTGGTAAAAAGTGGTGAATCGAATAAATATGATTTGTCGTCTATTAGAGCAATGATTACTGGCGCAGCACCTATGGGAATGGAACTTGAAGAAGCTGTGAAGGATAGATTGCCACAGACCGTACTTGGTCAGGGATATGGCATGACAGAGGCAGGGCCACTTTCAATTAGCCTTGCATTTGCAAAGGAACCATTCAAGACAAAACCAGGTGCATGTGGCACCGTCGTAAGAAACGCTGAGATGAAAATCGTTGATACAGAGACTGGTGCTTCTCTTCCCAGAAACAAAGCTGGTGAAATTTGCATTAGAGGCACAAAGGTTATGAAAGGATACCTAAATGATCCCGAGGCGACAAAGAGAACTATAGACAAAGAGGGATGGCTACACACAGGTGACATTGGTTTAATTGACGACGATGATGAAGTCTTCATTGTTGATCGATTAAAGGAATTGATCAAATACAAAGGATACCAAGTAGCTCCTGCTGAGCTCGAAGCGTTGTTGATTTCCCACCCAAACATTTCTGATGCTGCTGTGGTACCATTGAAAGATGATGTTGCTGGAGAATTACCGGTTGCATTTGTTGTAAGATCAAACGGTTCAAAGATCAGTGAGGATGAAATCAAGCAATACATTTCACAACAGGTTGTATTTTACAAGAGAATAAACAGAGTTTACTTCATAGACACTATTCCTAAAGCGGCCTCTGGCAAAATTCTGCGAAAGCAATTAACCGCAAGACTTAACGAAGGTTTGGTGGTGGCAACTTAA 1656 0.4173 MSPSSPPQQQFIFRSKLPDIEIPTHLPLHSYCFQNLSQFHNRPCLINGDTGEVLTYSDVHLTVRKIAAGLNTIGINQGDVIMLVLRNSPQFALTFLGASFRGAVITTANPFYTSSELSKQATATKTKLIVTQSAYLNKINDFAKFNNIKIVCIDSDSSSPLPSSEEVVDFSVLTNADENDAPEVKLTPNDIVALPFSSGTSGLPKGVMLTHENLVTTISQLVDGENPHQYTNGEDVLLCVLPMFHIYALNSILLCGIRCGAAVLILEKFEIKTLLELIEKYKVTVASFVPPIVLALVKSGESNKYDLSSIRAMITGAAPMGMELEEAVKDRLPQTVLGQGYGMTEAGPLSISLAFAKEPFKTKPGACGTVVRNAEMKIVDTETGASLPRNKAGEICIRGTKVMKGYLNDPEATKRTIDKEGWLHTGDIGLIDDDDEVFIVDRLKELIKYKGYQVAPAELEALLISHPNISDAAVVPLKDDVAGELPVAFVVRSNGSKISEDEIKQYISQQVVFYKRINRVYFIDTIPKAASGKILRKQLTARLNEGLVVAT* 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g3320 551 CDD 4CL 22 539 - -
Tpr2g3320 551 Pfam AMP-binding enzyme 35 449 IPR000873 -
Tpr2g3320 551 Gene3D - 5 443 IPR042099 -
Tpr2g3320 551 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 8 543 - -
Tpr2g3320 551 PANTHER 4-COUMARATE:COA LIGASE-LIKE PROTEIN 8 543 - -
Tpr2g3320 551 ProSitePatterns Putative AMP-binding domain signature. 194 205 IPR020845 -
Tpr2g3320 551 Pfam AMP-binding enzyme C-terminal domain 458 533 IPR025110 -
Tpr2g3320 551 SUPERFAMILY Acetyl-CoA synthetase-like 7 545 - -
Tpr2g3320 551 Gene3D - 444 547 IPR045851 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g3320 Tpr-Chr2 36816295 36824356 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g3320 12 511 Monolignol Biosynthesis Gene Families AT1G51680 64.752 0.0 656
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g3320 K01904 - gmx:100810418 858.981
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g3320 2 36816295 36824356 Tpr2g3320 2 36816295 36824356 ECH