Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g3307 ATGGGTAGAGCTCCATGTTGTGACAAGGCTAATGTGAAGAAAGGACCTTGGTCTCCTGAAGAAGATGCTACACTCAAATCATATATTGAAACAAATGGAACTGGTGGAAATTGGATTGCTCTTCCTCAAAAAATTGGGCTCAAGAGATGTGGAAAGAGTTGTAGACTTAGGTGGTTAAATTACTTGAGACCTAATATAAAACATGGTGGATTTACTGAAGAAGAAGACAACATCATTTGCAGCCTTTACATTAGCATTGGAAGCAGGTGGTCCATTATTGCTGCTCAGTTACCTGGAAGAACTGATAATGACATCAAAAATTATTGGAACACAAGATTGAAGAAGAAATTACTCGGGAAGCGAAAACAATCGAATAACAACAACAACAACAACAACAATTTGATGAATCAAAAGGATACAAATGGAATAGATGAGAATTCTTCTTATTCAAATTCTTTAAGTAGTTCAGCTCTTGAAAGACTTCAACTTCATATGCAACTTCAATCTCTTCAAAACCCTTTCTCTTTTTACAATAATAACCCTGCTTCATTAGTTTGGCCAAAGTTGCATCCTTCTCAAGAAAAAATGATCCAAATTAGTCTTCAAAATTCTAATAATATTATTAACCCTATGATGCAAAATGTTTTCACTTCACCACATGTTGATGTTTTGGAGAATATTAATATTCCTTTGGAGAATAATAATATTAACTTCAATGCTACTGGAAATAATGGTAATAATAATTATAATTCAATGCATTCTTCTTCAAGTGTTGCACCAAGAGGAGAAGGTGTTGAGATGAAGAGTAGTACCAATGAAGGAATTCAACAACTGGAAAATGAACTTGATGAGATTCTCAACAATAGAAATATTAATACTACAACAATGGAAGATGAATTTGATTGTTTTAGAGATATTAATAATAATGATGGTTCAAAGGATGTTCAAAGTATGATATGGTGGTCAAATGATTCAGGTGAAACTACTAAATCTGGATCCTCAAACTCATGGGATTCATCAACTAATCTTATGCAGGATCAAGGAATGTTCCAAGATTATGAACTAGGTTACACTATGTAG 1080 0.3333 MGRAPCCDKANVKKGPWSPEEDATLKSYIETNGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFTEEEDNIICSLYISIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKKLLGKRKQSNNNNNNNNNLMNQKDTNGIDENSSYSNSLSSSALERLQLHMQLQSLQNPFSFYNNNPASLVWPKLHPSQEKMIQISLQNSNNIINPMMQNVFTSPHVDVLENINIPLENNNINFNATGNNGNNNYNSMHSSSSVAPRGEGVEMKSSTNEGIQQLENELDEILNNRNINTTTMEDEFDCFRDINNNDGSKDVQSMIWWSNDSGETTKSGSSNSWDSSTNLMQDQGMFQDYELGYTM* 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g3307 359 MobiDBLite consensus disorder prediction 122 137 - -
Tpr2g3307 359 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Tpr2g3307 359 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Tpr2g3307 359 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Tpr2g3307 359 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Tpr2g3307 359 CDD SANT 71 111 IPR001005 -
Tpr2g3307 359 CDD SANT 16 62 IPR001005 -
Tpr2g3307 359 Gene3D - 7 68 - -
Tpr2g3307 359 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Tpr2g3307 359 MobiDBLite consensus disorder prediction 117 137 - -
Tpr2g3307 359 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Tpr2g3307 359 PANTHER MYB DNA-BINDING DOMAIN SUPERFAMILY PROTEIN-RELATED 1 288 - -
Tpr2g3307 359 SMART sant 67 115 IPR001005 -
Tpr2g3307 359 SMART sant 13 64 IPR001005 -
Tpr2g3307 359 Gene3D - 69 143 - -
Tpr2g3307 359 PANTHER OS09G0431300 PROTEIN 1 288 - -
Tpr2g3307 359 Coils Coil 268 295 - -
Tpr2g3307 359 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g3307 Tpr-Chr2 36713773 36715742 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g3307 1 191 MYB Transcription Factor Family AT5G57620 74.869 2.94e-99 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tpr2g3307 Myb_DNA-binding 2.7e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g3307 K09422 - gmx:100783440 417.157
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g3307 2 36713773 36715742 Tpr2g3307 2 36713773 36715742 ECH