Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g3296 ATGGGACTAAAGAGTTTTCGAACCAGCAACTGGAGTGTGCCACCTAAGCTATGCGATTCTTGCAAAATCACTTCTGCCGCGCTTTTTTGCCGTTCAGATTCCGCGTTTCTATGCATCAACTGTGATTCCAGAATTCATTCCGCTAACAAACTCTCTTCGCGCCACGAACGTGTCTGGATGTGTGAAGTGTGCGAACAAGCACCAGCTTCCGTCACGTGCAAAGCTGACGCTGCTGCTCTTTGCGTCACGTGCGATTCTGATATCCACTCTGCAAATCCACTCGCTCGTCGCCACGAGCGTGTTCCTGTTGAACCTTTCTACGACTCTGCTGAATCTGTTGTCAAATCTTCCACCGCCGCTGCTGCTGCTGCCGCTTCGTTCAATTTCGTTGTTCCTACTGATGACGGTTACGGTCAAGATGATGTTGAAACAGCCGCCGCGTGGCTAATTCCGAATCCTAATTTTGGATCTAAACTTGCTGAAACCCCAGATATCAAAACTAGAGAGATGTTTTTCTCCGATATGGATCCGTTTCTTGATTTTGATTACTCAAACAACTTCCAGAACAATAACTGTAGCAACGGTTTAAATGATAGCGTTGTTCCGGTTCAAACTAAACCTATTCCGGTGCCGATTATGAATCATAACTCAGAAGGTTGCTTCGACATCGATTTTTGTAGATCGAAGCTATCTTCGTTTAATTATCCATCACATTCTATTAGCCATAGCGTTTCATCTTCTTCACTTGACGTTGGAGTGGTACCGGACGGAAACACCGTGTCGGAGTTATCATACACTTTCGGTGGTGGTTCAGAATCAAGTGGAATAGTTTCAGGAGGTGTGAATAGTAACCAAGGGGTGCAAGGAGCAACTCAATTGTGTGGAATGGATCGTGAAGCAAGAGTTCTTAGGTACAGAGAGAAGAGAAAGAACCGTAAATTCGAGAAAACTATTCGTTACGCTTCGCGAAAAGCTTATGCAGAAACCCGGCCCAGAATTAAAGGCCGGTTCGCTAAACGAACCGAAATTGACTCGGATGTAGACCGTTTCTATAATCCGACCGATCCTCTTACAGTTCCTGGTTCACTTTTAATGGACTCTCAGTACGGCGTCGTTCCCACGTTTTAG 1128 0.4557 MGLKSFRTSNWSVPPKLCDSCKITSAALFCRSDSAFLCINCDSRIHSANKLSSRHERVWMCEVCEQAPASVTCKADAAALCVTCDSDIHSANPLARRHERVPVEPFYDSAESVVKSSTAAAAAAASFNFVVPTDDGYGQDDVETAAAWLIPNPNFGSKLAETPDIKTREMFFSDMDPFLDFDYSNNFQNNNCSNGLNDSVVPVQTKPIPVPIMNHNSEGCFDIDFCRSKLSSFNYPSHSISHSVSSSSLDVGVVPDGNTVSELSYTFGGGSESSGIVSGGVNSNQGVQGATQLCGMDREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTEIDSDVDRFYNPTDPLTVPGSLLMDSQYGVVPTF* 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g3296 375 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 5 8 375 - -
Tpr2g3296 375 CDD Bbox1_BBX-like 61 103 - -
Tpr2g3296 375 ProSiteProfiles CCT domain profile. 298 340 IPR010402 GO:0005515
Tpr2g3296 375 ProSiteProfiles Zinc finger B-box type profile. 56 103 IPR000315 GO:0008270
Tpr2g3296 375 SMART bboxneu5 13 60 IPR000315 GO:0008270
Tpr2g3296 375 SMART bboxneu5 61 103 IPR000315 GO:0008270
Tpr2g3296 375 CDD Bbox1_BBX-like 17 60 - -
Tpr2g3296 375 Pfam CCT motif 298 340 IPR010402 GO:0005515
Tpr2g3296 375 Pfam B-box zinc finger 58 103 IPR000315 GO:0008270
Tpr2g3296 375 Pfam B-box zinc finger 15 57 IPR000315 GO:0008270
Tpr2g3296 375 ProSiteProfiles Zinc finger B-box type profile. 13 60 IPR000315 GO:0008270
Tpr2g3296 375 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 8 375 IPR045281 GO:0009909
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g3296 Tpr-Chr2 36624695 36626669 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g3296 1 375 C2C2-CO-like Transcription Factor Family AT5G57660 54.974 1.28e-116 341
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Tpr2g3296 zf-B_box 4.7e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g3296 - - cam:101510742 579.711
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g3296 2 36624695 36626669 Tpr2g3296 2 36624695 36626669 ECH