Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g3292 ATGGCCAAATCCTTGTGTTTTTCATGGTTTGTGTTATATGTTTTTCTTTTGGTGGTACATATGCAAACGGTGAGTACAAACGCAAACGAGATTGGAGTGATCAAATTGAGAGTCGGGGTCCCTAAGAAAGAAGGTTTCACACAATTTGTGAATGTAGTTTGGGACTCTCATGAGAACAAGTACAATGTTTCTGGATATTGCATGGATGTTTTCAATGCCGTTGTAAGCAACTTAACTTTCAAGGTTTCTCTACAAATTGAACCTTATGATATTGATGATTCAAAAGGCAGTACTAGAACATACGATTCACTTCTACACCAGATCCCAGAAAAGTATGATGTTGTGGTGGGCGACATAACAATTTTGGCGCATCGTGCACAATTTGTAGATTTTACACTGCCATATACAGCATTAGAAGTTAGAATGTTAGTTCCTGTTGTACATGGGAGGCACCAAACCATGTGGATTTTTGTGAAACCCTTTAGCTGGGATCTTTGGTTGAGCATACTCATCATCTCCGTGCTCATAGGGTTTGTCATTCTCATCATGGAAAGAAACGTACATATTGTTCCTCACCAGAACCAGAGTTCCCCATATCGACAACAACTCAACGCAATAACCATTTTATGGTTTCCGATTTCACAAGCCATTCTTCCTGAAAGACATGTGGTTGCCAAAAAGTGCTCAAGATTTGTGTTGATGGTTTGGCTACTATTAGCATTTGTACTAATGCAAAGTTACACAGCTAATTTGACGTCTATATTGACCGTAGATCAGATACAACCCAGTTCTCTCACACTGAATGATCTAAGGAAACATGGATATTATGTTGGATATCAAACCGGTTCTTTCGTTTATCACTTATTGGTACAACAATTGCAGTTTGATCCGTCCATGTTGAAGGCATATGACAACATTGATGACTATCATGACGCTTTGAAGCGTGGAAGCCAAGGTGGGGGTGTTATCGCTATATTCGACGAAGTCCCCTACCTTAATGCCTACCTTCATAAATTTGGATCCAATTACATCAAAGCTGGTTCCACCTATCGAAGTGAAGGATTTGGTTTTGTATTCCCTTACAACTCCAATCTTACTGCTCACTTTTCAAGAGCCATCTTAAATGTGAATGACAATTATTATTTAATGCATAAGATTGAGGAAAAATATTTTGGGAGAAATGAAGAGGTACAAAAGCAGTCCGTGCAAGTGTCTTCAGCTTCACCAAGTCTTACATTTCACAGCTTTGCAGGGCTATTTTTGATCACTGGCATTTCTATCTTATTGGCATTATTTGTCTCTGAAATTCTTATTTGTCAAAAATCTATCTCGATGGTTAGAGAATACATTCAGAGATATTTGTTACGCTCTCCTACAGAAGCACGTGTTCATCCAAATGATATTCATTTAACACAGCAACAACGTATCAAGCCAATCAAGGTGGCATCGTGTAAAACTATTTTACACCGTCAGTACATATCAATTAAACTCTTTAATTATTTAATTAATGTTGTTGTTTGTTTTTTTTTTTTTTATTTGTTTGGATATAATGTACTTGCGATGGGCTCAATTAATGGGCCAAACAAATGGACTTTCATTTTTATATATTTTTTTTTGTTTTTCGATTTTTAA 1632 0.3689 MAKSLCFSWFVLYVFLLVVHMQTVSTNANEIGVIKLRVGVPKKEGFTQFVNVVWDSHENKYNVSGYCMDVFNAVVSNLTFKVSLQIEPYDIDDSKGSTRTYDSLLHQIPEKYDVVVGDITILAHRAQFVDFTLPYTALEVRMLVPVVHGRHQTMWIFVKPFSWDLWLSILIISVLIGFVILIMERNVHIVPHQNQSSPYRQQLNAITILWFPISQAILPERHVVAKKCSRFVLMVWLLLAFVLMQSYTANLTSILTVDQIQPSSLTLNDLRKHGYYVGYQTGSFVYHLLVQQLQFDPSMLKAYDNIDDYHDALKRGSQGGGVIAIFDEVPYLNAYLHKFGSNYIKAGSTYRSEGFGFVFPYNSNLTAHFSRAILNVNDNYYLMHKIEEKYFGRNEEVQKQSVQVSSASPSLTFHSFAGLFLITGISILLALFVSEILICQKSISMVREYIQRYLLRSPTEARVHPNDIHLTQQQRIKPIKVASCKTILHRQYISIKLFNYLINVVVCFFFFYLFGYNVLAMGSINGPNKWTFIFIYFFLFFDF* 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g3292 543 Pfam Ligand-gated ion channel 393 426 IPR001320 GO:0015276|GO:0016020
Tpr2g3292 543 PRINTS NMDA receptor signature 231 258 IPR001508 GO:0005216|GO:0006811|GO:0016020|GO:0038023
Tpr2g3292 543 PRINTS NMDA receptor signature 416 440 IPR001508 GO:0005216|GO:0006811|GO:0016020|GO:0038023
Tpr2g3292 543 PANTHER RECEPTOR 3.3, PUTATIVE-RELATED 1 472 - -
Tpr2g3292 543 SMART GluR_14 35 393 IPR001320 GO:0015276|GO:0016020
Tpr2g3292 543 Gene3D - 154 295 - -
Tpr2g3292 543 SUPERFAMILY Periplasmic binding protein-like II 33 393 - -
Tpr2g3292 543 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 1 472 - -
Tpr2g3292 543 Pfam Bacterial extracellular solute-binding proteins, family 3 60 392 IPR001638 -
Tpr2g3292 543 Gene3D - 29 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g3292 Tpr-Chr2 36561651 36565329 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g3292 35 433 Ion Channels AT5G11210 36.543 3.08e-77 258
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g3292 K05387 - gmx:100807817 557.755