Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g3288 ATGGCCAAGTCCTTGTGGTTTTCATGCTTTCTAATACTTTTGCTTTTGGTAGTACAAATGCAAACAGTGAGTAGTGATCATGAGTCAAACACAACATCAATTGGAGTGATCAAATTGAGGGTTGGGGTTCCTAAGAAAGAAGGTTTTGCCCAATTTGTTAAAGTAGTTTGGAATTCTCGTGAAAACAAGTACAATAATGTCTCTGGATATTGCATGGATATTTTCAATGCTGTTGTAAAAAACTTGACTTTCAAGGTTTCTCTACAAATTGAACCTTATGTTAATGAATCAAAACACAGTGCTGGAACATACGATTCACTTGTCCGACAGGTCCCAGTAAAGTATGATGTTGTGGTTGGAGACATAAGTATCGTGGCGGATCGGTCACAATTTGTAGATTTTACACTACCATATACAGAATCAGGAGTTAGAATGTTAGTTCCAATTCAACATGGAAGACACCAAACCATGTGGATTTTTGTGAAACCCTTCAGCTGGCAACTTTGGTTGAGCATACTCATAATCAACATGCTCATAGGGTCTGTCATACTCATCATGGAAAGAAATGTACACACCCTTCCCGATGATCGTCAAGAGGAGCGTTCTTCGTTTAAAAAACAGCTCAGCGCAATGACTATTTTATGGTTTCCAATATCACAAGCCGTTCTACCCGAAAGACAAGTGGTAGCCAAAAACTGCTCAAGATTTGTATTGATGGTATGGCTTTTGTTGGCGTTTGTTCTCATGCAAAGTTACACTGCAAATTTAACTTCAATATTGACCTTAGATAAGATGCAACCTAGTTTTTTCAGCGTGAATGATCTAAGGAAAGGTGATCATTATGTTGGATATCAAGCTGGTTCATTTGTTTATGATTTGTTGGTAAAACAATTCAAGTTTAGTCCATTAAAATTGAAAGCATATAGCAACATTTCTAGCTATAATAATGCTTTAAAGCTTGGAAGCCAACGTGGGGGTGTCACGGCTATATTTGATGAAGTGCCCTACCTTAATGTTTTCCTTAGAAGGTTCAGATCCAATTACATCATAGCTGGCCCCACTTATCGAACCGATGGATTTGGTTTTGCATTCCCTTTGAACTCCAATCTTGTTTCTCACTTTTCAAGAGCCATATTGAACGTGACTCAAAATCATGAACTTATGAATAAGATTGAGAAAAAATATTTTGGGAAGAGTATTGAAGAGCTACAACAACAATCTTCAGAAATGTCTTCAATTTCACCAAGTCTTACCTTTCATAGCTTTGCAGGGCTCTTCTTAATCACTGGCATTTCTACCTTATTGGCCTTATTTGTCTCAGAAACACTATTTTTTTGGAAAAAAACAATTTCTATGGTTAAAAAATACTTTCTACACTCCCCATCTTCCACAAAAACACATATTCATCCAAGTGATCTTGAATCAACACAGAAAACTGATCAAGCCGATCAACCAAGCTTTAATTAA 1467 0.3681 MAKSLWFSCFLILLLLVVQMQTVSSDHESNTTSIGVIKLRVGVPKKEGFAQFVKVVWNSRENKYNNVSGYCMDIFNAVVKNLTFKVSLQIEPYVNESKHSAGTYDSLVRQVPVKYDVVVGDISIVADRSQFVDFTLPYTESGVRMLVPIQHGRHQTMWIFVKPFSWQLWLSILIINMLIGSVILIMERNVHTLPDDRQEERSSFKKQLSAMTILWFPISQAVLPERQVVAKNCSRFVLMVWLLLAFVLMQSYTANLTSILTLDKMQPSFFSVNDLRKGDHYVGYQAGSFVYDLLVKQFKFSPLKLKAYSNISSYNNALKLGSQRGGVTAIFDEVPYLNVFLRRFRSNYIIAGPTYRTDGFGFAFPLNSNLVSHFSRAILNVTQNHELMNKIEKKYFGKSIEELQQQSSEMSSISPSLTFHSFAGLFLITGISTLLALFVSETLFFWKKTISMVKKYFLHSPSSTKTHIHPSDLESTQKTDQADQPSFN* 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g3288 488 Pfam Ligand-gated ion channel 399 431 IPR001320 GO:0015276|GO:0016020
Tpr2g3288 488 Pfam Bacterial extracellular solute-binding proteins, family 3 63 398 IPR001638 -
Tpr2g3288 488 Gene3D - 33 156 - -
Tpr2g3288 488 PANTHER RECEPTOR 3.3, PUTATIVE-RELATED 1 475 - -
Tpr2g3288 488 SUPERFAMILY Periplasmic binding protein-like II 8 399 - -
Tpr2g3288 488 SMART GluR_14 38 398 IPR001320 GO:0015276|GO:0016020
Tpr2g3288 488 Gene3D - 157 300 - -
Tpr2g3288 488 MobiDBLite consensus disorder prediction 468 488 - -
Tpr2g3288 488 CDD GluR_Plant 38 396 - -
Tpr2g3288 488 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 1 475 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g3288 Tpr-Chr2 36538811 36542403 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g3288 38 439 Ion Channels AT5G11210 36.855 1.34e-80 265
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g3288 K05387 - gmx:100811144 580.867