Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g3275 ATGCCTCCTCTTCATCACCATCATGCCGATCCAGAACCTAAACCAAACCCTAATCTCCTTTCCCTCTTCCTCAAACCAATCATCATGCTCCTTCTCACATCCCTCTTCTTCCTCTTCCTCGGTTTCGCCGCTTTTCTTCTCCTTAATCTCTTCCTCCTCGCCGGCGCACTTCACCGTCTCCGTTTCCGTCCTACTCCAACTCGCCGTCTTCAATCTCCTTCCGACGCTTTTCTCCCTCACGAAATCAACAACCTACCTAATTTCCGTGTCAAAGGATCCGTACCCGTACCCGGACCCGATTCACGATGTGCTGTTTGTTTGGATGGTTTTCGTAATGGTCAATGGTGTCGAAATCTCGCTGCGTGTGGTCATGTTTTTCATCGTAGATGTATTGACACGTGGCTTCTTAAAGTTGCCACGTGTCCTACTTGTCGTACACCGGTTCGATCTAAACCCGAACCACCTCAATGTTCGGTTTTAGAAGATGATGAAGGTTCTTCGCAAATTTGGAATTGCTCTAATAATAATTCCAATGGTTTCACCGTTTTATAG 552 0.4692 MPPLHHHHADPEPKPNPNLLSLFLKPIIMLLLTSLFFLFLGFAAFLLLNLFLLAGALHRLRFRPTPTRRLQSPSDAFLPHEINNLPNFRVKGSVPVPGPDSRCAVCLDGFRNGQWCRNLAACGHVFHRRCIDTWLLKVATCPTCRTPVRSKPEPPQCSVLEDDEGSSQIWNCSNNNSNGFTVL* 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g3275 183 SUPERFAMILY RING/U-box 99 152 - -
Tpr2g3275 183 SMART ring_2 103 144 IPR001841 -
Tpr2g3275 183 Pfam Ring finger domain 102 145 IPR001841 -
Tpr2g3275 183 ProSiteProfiles Zinc finger RING-type profile. 103 145 IPR001841 -
Tpr2g3275 183 PANTHER RING-H2 FINGER PROTEIN ATL56 6 173 - -
Tpr2g3275 183 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 6 173 - -
Tpr2g3275 183 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 67 151 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g3275 Tpr-Chr2 36416293 36421493 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g3275 1 172 C3H Transcription Factor Family AT2G18670 39.560 5.03e-34 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g3275 - - pvu:PHAVU_003G150700g 162.925