Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g3273 ATGGGAAGAACAAGTTTTGTGCCATTTCAAGGTGACAACACCTTTATGCCACCATTAGCACAACCACCAAATTCTTTTCATTTTGATTCCAACCTAATTCCACCATTTTCACCCATCATAGTTTCTAGTCTTCGATCTGATGATTTTGGTTTTAACGATAGTGGTACCTTAAAGGTTAGTCCAAGTATTATTCTAATCATTATCATTTTAGCTATTGTTTTCTTCATTTCTGGTTTGCTTCATCTCTTGGTTAGATTTCTATATAGACCTGAGAGTAGAAACCCTGATGAATTGGATGATGTTACTGTTCTTCAAGGTCAATTGCAACAGCTTTTTCATCTTCATGATTCTGGTGTTGACCAATCTTTCATTGATACACTTCCTGTGTTTCTTTACAAAACTATTATTGGATTGAAAGTTAACCCTTTTGATTGTGCTGTTTGTTTATGTGAATTTGAACTTGAAGATAAGCTTAGATTGTTGCCAAAATGTAGTCATGCTTTTCATATGGAGTGTATTGATACATGGCTTTTGTCTCACTCTACTTGTCCTCTTTGTAGAGCTAATTTGCTTCATGATTTCAACACTAGTAATAATCGTTCACCTTTAGTTCTTGTTCTTGAATCTGGTAGTGATAGTTCAAGGGAAATTGATCAAGAAAGAGAGGCTGAAATTGCTACAGCTAGTGTTGTTGGTAGGACTGGTTCTGTTATGTCAACAAATTCTTATCTTGGTACAGTTCACGGAGATGGTGAATTCGGAAATGATTCGGCTTTGGTTGAAAACATTCCTGATCCAAATGCTGAAGTTGGTTGTGATGGTGTGCAGAAAGTGGTTACTGTTAAGCTTGGAAAGTATAGGAATGTTGATGGTGGAGGGGAAGGAAGTAGCAGCAACAATGTGGATGATAGGAGGTGTTTTTCAATGGGATCATTTGCTTATATTTTGGATGAAACTTCATCATTGCAGGTACCAATTAGAACTCCAATGAAACAACAATTGAATAAGAAGAAGAAGAAGAAGAATGTTTTGCCTTTGATTCCAGGACATAAACAAGCAATGTCAGAATGTGACTGTGAATCTAGAAGAGATTTCAAATTTACAAGCTTTGATTCGGTTAGAACTGAGGATGCTGTTGTTAAAGGTAATACTAGTGAGCCTGCTGCTATTGATAATAGGAGTAGAAAAGAGAGTTTCTCTATATCAAAGATTTGGCTTAGAGGGAAAAAAGATAAGAGAAATGGTGATGTAGCTGATTCATCTAGAAGGGCTTTTTCATTTAGGTTTCCATTACAAAGTAATGTCGGTGAAGATTTGAAGGGTAAGAATGGTAGGTTTCATACAAGGAGTACTGTTTCTGAGATGGATTTTGGGAAATGGGAAAATGGAGTAGCAAGTGAATTTAGTGGTTATGATGAAGAAAATCAAAGCTGTTATAGTATGGATTCTTCTCAACCTAGAGCACCTTCTTTTGCTAGAAGAACTTTGCTTTGGCTCACTGGAAGACAGAATAAGGTTGTTCATTCATCATCTGCTTCTACCACCCTTTAG 1551 0.3636 MGRTSFVPFQGDNTFMPPLAQPPNSFHFDSNLIPPFSPIIVSSLRSDDFGFNDSGTLKVSPSIILIIIILAIVFFISGLLHLLVRFLYRPESRNPDELDDVTVLQGQLQQLFHLHDSGVDQSFIDTLPVFLYKTIIGLKVNPFDCAVCLCEFELEDKLRLLPKCSHAFHMECIDTWLLSHSTCPLCRANLLHDFNTSNNRSPLVLVLESGSDSSREIDQEREAEIATASVVGRTGSVMSTNSYLGTVHGDGEFGNDSALVENIPDPNAEVGCDGVQKVVTVKLGKYRNVDGGGEGSSSNNVDDRRCFSMGSFAYILDETSSLQVPIRTPMKQQLNKKKKKKNVLPLIPGHKQAMSECDCESRRDFKFTSFDSVRTEDAVVKGNTSEPAAIDNRSRKESFSISKIWLRGKKDKRNGDVADSSRRAFSFRFPLQSNVGEDLKGKNGRFHTRSTVSEMDFGKWENGVASEFSGYDEENQSCYSMDSSQPRAPSFARRTLLWLTGRQNKVVHSSSASTTL* 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g3273 516 Pfam Ring finger domain 144 187 IPR001841 -
Tpr2g3273 516 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 107 192 IPR013083 -
Tpr2g3273 516 CDD RING-H2_PA-TM-RING 144 187 - -
Tpr2g3273 516 SMART ring_2 145 186 IPR001841 -
Tpr2g3273 516 ProSiteProfiles Zinc finger RING-type profile. 145 187 IPR001841 -
Tpr2g3273 516 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE-RELATED 27 446 - -
Tpr2g3273 516 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 27 446 - -
Tpr2g3273 516 SUPERFAMILY RING/U-box 139 203 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g3273 Tpr-Chr2 36394015 36396094 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g3273 58 513 C3H Transcription Factor Family AT2G18650 45.263 7.60e-100 306
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g3273 - - gmx:100797283 623.239
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g3273 2 36394015 36396094 Tpr2g3273 2 36394015 36396094 ECH