Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g3267 ATGGTATCTAAGGGTATAAATTCCGTCCTATGGAGTTTTGTTTTGATTGCCATAATTTTCACTCCAAAAATTAGTTTTGCCAAACAATCTAAGTTAATTGGCATGAAAATGAACATGATTGATCGGTGTTGGAGACCAAATCCTGAATGGAGAAAACATAGGCAACAACTAGCAACTTGCTCTGTAGGTTATGTTGGTAAGATGACAAACAACATTGGTAAGGATCTCATCCATTATAAAGTTACCAACCCAAATGACGACCCCACAAATCCCAAACCTGGTACGTTAAGATACGGAGCTTCTGTAATTCAAGGTAAAGTGTGGATCACATTCCAAAAAGATATGAACATCAAGCTCATGAAACCACTTCTCATTAGTAGTTTTACTACCATTGATGGTCGCGGCGTTAATGTGCACATTGCTAATAATGCTTGCTTAATGATATTCAAGGCTACCAACATAATTATTCATAGCCTTCGAATTCATCACTGCAAAGCTCAAGCTCCAGGGATGGTGATGGGGTCTAATGGAAAATTAATTAATTTGGGTCAAGTGGATGGAGATGCAATTAGATTGGTTACCGCTTCAAATATTTGGATTGATCATAATACACTTTATGGATGTGAAGATGGTCTTCTTGATGTCACACGAGGTTCTACTAATGTTACTATTTCCAATAATTGGTTTAGAGAACAAAATAAGGTTATGCTTCTTGGGCATGATGATGGGTATGTGAGGGACATAAACATGAAGGTTACTGTTGTGTATAATCATTTTGGACCTAACTGCAACCAACGAATGCCAAGAATTCGGCACGGATATGCACATGTAGCCAACAATCTTTATTTAGGGTGGGTGCAATATGCCATCGGAGGAAGCATGGGACCTAGCCTTAAAAGTGAATCTAACCTCTTTATAGCACCAAAAGTTGGGAGTAAAGAGGTAACATGGAGAAAAATTGGTAATACAAATGGAGACAAATGGGAATTTCATTCGGTTAGGGATACATTTGAAAATGGAGCCTCTTTCATGGTAACAAAAGGAGGGCGTGTGACAAAGCCGAATTATAATAAAGAACAAAGTTTTAAAGTTGTTGATGTAAAATATGTTAGATCATTGACAAGATCATCAGGTGCATTTAAATGTAGTAGAACCTCTATATGTTGA 1167 0.3728 MVSKGINSVLWSFVLIAIIFTPKISFAKQSKLIGMKMNMIDRCWRPNPEWRKHRQQLATCSVGYVGKMTNNIGKDLIHYKVTNPNDDPTNPKPGTLRYGASVIQGKVWITFQKDMNIKLMKPLLISSFTTIDGRGVNVHIANNACLMIFKATNIIIHSLRIHHCKAQAPGMVMGSNGKLINLGQVDGDAIRLVTASNIWIDHNTLYGCEDGLLDVTRGSTNVTISNNWFREQNKVMLLGHDDGYVRDINMKVTVVYNHFGPNCNQRMPRIRHGYAHVANNLYLGWVQYAIGGSMGPSLKSESNLFIAPKVGSKEVTWRKIGNTNGDKWEFHSVRDTFENGASFMVTKGGRVTKPNYNKEQSFKVVDVKYVRSLTRSSGAFKCSRTSIC* 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g3267 388 Gene3D - 37 381 IPR012334 -
Tpr2g3267 388 SMART amb_all 114 311 IPR002022 -
Tpr2g3267 388 PANTHER PECTATE LYASE 5 385 - -
Tpr2g3267 388 Pfam Pectate lyase 124 305 IPR002022 -
Tpr2g3267 388 PRINTS Pollen allergen Amb family signature 85 110 IPR018082 -
Tpr2g3267 388 PRINTS Pollen allergen Amb family signature 122 138 IPR018082 -
Tpr2g3267 388 PRINTS Pollen allergen Amb family signature 186 207 IPR018082 -
Tpr2g3267 388 PRINTS Pollen allergen Amb family signature 266 285 IPR018082 -
Tpr2g3267 388 PRINTS Pollen allergen Amb family signature 288 307 IPR018082 -
Tpr2g3267 388 PRINTS Pollen allergen Amb family signature 328 352 IPR018082 -
Tpr2g3267 388 PRINTS Pollen allergen Amb family signature 359 382 IPR018082 -
Tpr2g3267 388 PANTHER PECTATE LYASE 18-RELATED 5 385 IPR045032 GO:0030570
Tpr2g3267 388 SUPERFAMILY Pectin lyase-like 35 382 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g3267 Tpr-Chr2 36334977 36336675 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g3267 68 315 Polysaccharide Lyase AT5G09280 72.177 1.16e-140 400
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g3267 K01728 - gmx:100780437 665.996