Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g3254 ATGGCAATGGCTGCTGCTATGCGACGCGAAGGGAAGCGTTTGGCTCCTCTCATCTCTTCTCAACCAATCAACAACACTCTCCGATCCTCTCTCACCTCTCCGTTAGATCAAACTTCTATTGGAGGAGCGCGTTCAATTTCCACTCAAATTGTGAGAAATCGCATGAAGAGTGTGAAAAATATCCAGAAAATTACTAAGGCTATGAAGATGGTTGCTGCTTCTAAATTACGAGCTGTTCAAACTAGGGCTGAAAATTCACGTGGTTTGTGGCAGCCATTTACGGCTCTTCTCGGTGATGCCGCAAGTGTTGATGTCAAGAAGAATGTTGTTGTTACTGTTTCTTCGGACAAAGGTCTTTGTGGTGGAATCAACTCCACATCTGTCAAGATAAGCAGGGTATTGAGCAAGTTGAATTCGGGACCTGATAAAGAGACAAAGTATGTCATATTGGGAGAGAAGGCTAAAGCTCAGTTGATTCGTGACTCAAAGAAAGACATTGCACTCAGTTTGACTGAGCTGCAAAAGAATCCTCTGAATTATACTCAGGTGTCTGTCTTGGCTGATGACATTCTGAAGAACGTGGAGTACGATGCATTGAGGATTGTTTTCAACAAATTTCATTCGGTTGTGCAATTTATACCAACAGTGTCAACTGTACTATCCCCTGAGATTGTCGAAAGAGAGGCTGAAGCTGGAGGAAAGCTTGGTGAACTGGATTCCTACGAGATTGAAGGGGGTGAGACAAAATCAGAAGTTCTTCAGAATCTGTCCGAGTTTCAGTTTTCTTGTGTCATGTTCAACGCGGTGTTGGAGAATGCCTGCAGTGAGCAAGGAGCAAGAATGTCTGCCATGGACAGTTCTAGCAGGAATGCTGGGGATATGCTTGATCGTCTGACCCTCACTTATAATAGAACTCGTCAAGCATCAATCACCACTGAGTTGATTGAGATTATCTCTGGAGCATCAGCACTGACAGGTTAA 981 0.4393 MAMAAAMRREGKRLAPLISSQPINNTLRSSLTSPLDQTSIGGARSISTQIVRNRMKSVKNIQKITKAMKMVAASKLRAVQTRAENSRGLWQPFTALLGDAASVDVKKNVVVTVSSDKGLCGGINSTSVKISRVLSKLNSGPDKETKYVILGEKAKAQLIRDSKKDIALSLTELQKNPLNYTQVSVLADDILKNVEYDALRIVFNKFHSVVQFIPTVSTVLSPEIVEREAEAGGKLGELDSYEIEGGETKSEVLQNLSEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGDMLDRLTLTYNRTRQASITTELIEIISGASALTG* 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g3254 326 ProSitePatterns ATP synthase gamma subunit signature. 310 323 IPR023632 -
Tpr2g3254 326 Pfam ATP synthase 49 324 IPR000131 GO:0015986|GO:0045261|GO:0046933
Tpr2g3254 326 SUPERFAMILY ATP synthase (F1-ATPase), gamma subunit 49 324 IPR035968 GO:0015986|GO:0045261|GO:0046933
Tpr2g3254 326 Gene3D - 71 283 - -
Tpr2g3254 326 PRINTS ATP synthase gamma subunit signature 105 124 IPR000131 GO:0015986|GO:0045261|GO:0046933
Tpr2g3254 326 PRINTS ATP synthase gamma subunit signature 197 214 IPR000131 GO:0015986|GO:0045261|GO:0046933
Tpr2g3254 326 PRINTS ATP synthase gamma subunit signature 271 290 IPR000131 GO:0015986|GO:0045261|GO:0046933
Tpr2g3254 326 PRINTS ATP synthase gamma subunit signature 302 323 IPR000131 GO:0015986|GO:0045261|GO:0046933
Tpr2g3254 326 TIGRFAM ATPsyn_F1gamma: ATP synthase F1, gamma subunit 47 324 IPR000131 GO:0015986|GO:0045261|GO:0046933
Tpr2g3254 326 CDD F1-ATPase_gamma 47 321 IPR000131 GO:0015986|GO:0045261|GO:0046933
Tpr2g3254 326 PIRSF ATP_synthase_gamma 17 324 - -
Tpr2g3254 326 PANTHER BNAA05G10580D PROTEIN 1 324 - -
Tpr2g3254 326 Hamap ATP synthase gamma chain [atpG]. 45 324 IPR000131 GO:0015986|GO:0045261|GO:0046933
Tpr2g3254 326 Gene3D ATP synthase, gamma subunit, helix hairpin domain 51 321 - -
Tpr2g3254 326 PANTHER ATP SYNTHASE GAMMA CHAIN 1 324 IPR000131 GO:0015986|GO:0045261|GO:0046933
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g3254 Tpr-Chr2 36251523 36256112 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g3254 28 324 Primary Pumps ATPases AT1G15700 30.659 4.63e-28 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g3254 K02136 - gmx:100790402 532.332