Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g3247 ATGGCGAAAAAATCGCAGAAGCAAATCGAGAAAGACAACGATAACAATAATCTAAATGCAAGTAACACGGTTACTACTAAGGCAAAACGGACTAGGAAAAGTGTTCCGAGAACTAGTCCACCTCAACGTAGCTCAATATATAGAGGTGTCACTAGGCATCGGTGGACAGGTCGATATGAAGCTCATTTGTGGGATAAGAATTGTTGGAATGAGTCTCAAAACAAGAAAGGAAGACAAGTGTATCTTGGTGCCTATGATAATGAAGAGACTGCAGCACATGCTTATGATCTAGCAGCATTGAAATATTGGGGTCAAGATACCATAATTAATTTTCCGTTATCAAACTATCAGAAAGAATTGATTGACATGGAGAGTCAATCAAGGGAGGAATATATTGGATCCTTAAGAAGGAAAAGCAGTGGTTTTTCGAGGGGAGTTTCTAAATATAGAGGTGTTGCAAGACATCATCATAATGGAAGGTGGGAGGCTAGGATTGGCAAAGTTTTTGGCAATAAGTATCTTTATCTTGGAACCTATGCCACACAAGAAGAAGCAGCTACTGCTTATGACATGGCAGCTATTGAATATCGTGGACTTAATGCTGTTACCAATTTTGATCTAAGCCGTTATATTAAGTGGCTTAAGCCCAACAACAACAACAATGATAATAACAAGTCCAATACTAATCCTTGTGACATTAACACTAATTATAGTACTAACGACCAAAACTCTAATGAAGAATTGGAATTTAGCATCCTAGACAATGAGACATTATCACTCAATAATTCTATTGATGAAGCCACATTGGTTCAACCTCGACCAACTAGTGCCACGTCAGCCCTAGAGCTTCTACTTCAATCATCTAAGTTTAAGGAAATGGTGGAAATGGCATCTATGACATCCAATGTGTCAACAACATTGGAGTCTGATCAATTGTCACAATGCTCATTTCCTGATGATATTCAAACTTACTTTGAATATGAAGATTTTAATGATGGTACCATGTTGGATGACCTCAACTCCATTGTGCCTATGTTCCACTTTGAAGGTGCTGAGATTTTATAA 1065 0.3793 MAKKSQKQIEKDNDNNNLNASNTVTTKAKRTRKSVPRTSPPQRSSIYRGVTRHRWTGRYEAHLWDKNCWNESQNKKGRQVYLGAYDNEETAAHAYDLAALKYWGQDTIINFPLSNYQKELIDMESQSREEYIGSLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGKVFGNKYLYLGTYATQEEAATAYDMAAIEYRGLNAVTNFDLSRYIKWLKPNNNNNDNNKSNTNPCDINTNYSTNDQNSNEELEFSILDNETLSLNNSIDEATLVQPRPTSATSALELLLQSSKFKEMVEMASMTSNVSTTLESDQLSQCSFPDDIQTYFEYEDFNDGTMLDDLNSIVPMFHFEGAEIL* 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g3247 354 CDD AP2 147 208 IPR001471 GO:0003700|GO:0006355
Tpr2g3247 354 Gene3D AP2/ERF domain 147 208 IPR036955 GO:0003700|GO:0006355
Tpr2g3247 354 Gene3D AP2/ERF domain 46 114 IPR036955 GO:0003700|GO:0006355
Tpr2g3247 354 ProSiteProfiles AP2/ERF domain profile. 46 112 IPR001471 GO:0003700|GO:0006355
Tpr2g3247 354 ProSiteProfiles AP2/ERF domain profile. 148 206 IPR001471 GO:0003700|GO:0006355
Tpr2g3247 354 SUPERFAMILY DNA-binding domain 147 208 IPR016177 GO:0003677
Tpr2g3247 354 Pfam AP2 domain 46 104 IPR001471 GO:0003700|GO:0006355
Tpr2g3247 354 Pfam AP2 domain 147 198 IPR001471 GO:0003700|GO:0006355
Tpr2g3247 354 PRINTS Ethylene responsive element binding protein signature 47 58 IPR001471 GO:0003700|GO:0006355
Tpr2g3247 354 PRINTS Ethylene responsive element binding protein signature 188 208 IPR001471 GO:0003700|GO:0006355
Tpr2g3247 354 SUPERFAMILY DNA-binding domain 45 114 IPR016177 GO:0003677
Tpr2g3247 354 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 332 - -
Tpr2g3247 354 SMART rav1_2 46 118 IPR001471 GO:0003700|GO:0006355
Tpr2g3247 354 SMART rav1_2 148 212 IPR001471 GO:0003700|GO:0006355
Tpr2g3247 354 MobiDBLite consensus disorder prediction 12 29 - -
Tpr2g3247 354 PANTHER AP2 DOMAIN-CONTAINING TRANSCRIPTION FACTOR 1 332 - -
Tpr2g3247 354 MobiDBLite consensus disorder prediction 1 49 - -
Tpr2g3247 354 CDD AP2 45 114 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g3247 Tpr-Chr2 36167932 36171016 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g3247 42 210 AP2-EREBP Transcription Factor Family AT5G57390 72.781 3.79e-91 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Tpr2g3247 AP2 4.4e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g3247 K09285 - gmx:100793339 510.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g3247 2 36167932 36171016 Tpr5g0516 5 7676546 7680090 PCT