Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g3231 ATGGAAGCCAGCGCCGGATTAGTCGCTGGTTCGCACAACCGTAATGAGCTTGTTGTCATTCATGGGCATGAAGAGCATAAGCCTTTGAAGAACTTGGATGGTCAAGTGTGTGAGATATGTGGTGATGATGTTGGACTCACTGTTGATGGAGATTTGTTTGTGGCATGTAACGAGTGCGGTTTTCCGGTGTGCCGACCATGCTATGAATATGAAAGAAGGGAGGGGAGACAACTTTGTCCTCAGTGCAAGACCAGATACAAGCGTCTCAAAGGGAGTCCTCGGGTTGAGGGAGATGACGATGAGGAGGACGTGGATGATATTGAACATGAATTTAACATTGAAGACAAAATTAACAATCATGATCATTCTGCTGAGGCTATGCTGCATGGGAAGATGAGCTATGGAAGAGGTCCTGAAGATGATGAGAATGCACACTTCCCAGCTGTTATTGCCGGTGGTCGCTCTCGGAATGTAAGATTTGCACCACTTTTAATCCATCTTAGCCTATGTAGAATTTGTAATTCAATACAACTAAGTTTTCTTGTCACATGCATGCAGGTGAGTGGTGAGTTTCCAATATCATCTCATGGTTATGGGGACCAGATGTTATCTTCTTCACTGCATAAAAGAGTTCATCCATATTCCGCTTCTGATCCTCGAAGTGCAGGATGGGATGAAAGAAGAGATGACGGATCATATGATAGAGTGGATGACTGGAAATTGCAGCAAGGAAATTTGGGACCTGAACCTGATGAAGATCTAGATGCAGACATGTCAGATGAAGCAAGACAACCACTGTCAAGGAAGGTACCAATAGCATCTAGCAAAATCAATCCATATAGGATGGTGATCGTGGCACGGCTTGTTATTCTTGCCTTCTTTCTGCGATACAGACTTATGAACCCAGTACATGATGCAATGGGGTTATGGCTAACTTCTATTATATGTGAAATCTGGTTTGCTATTTCTTGGATCCTTGATCAGTTTCCCAAATGGTACCCTATTGATCGAGAAACCTACCTTGATCGCCTTTCAATCAGGTATGAGCGTGAAGGCGAACCCAATATGCTTGCTCCTGTAGATGTGTTTGTCAGTACTGTGGATCCCTTGAAGGAACCTCCTCTGAATACAGCAAACACAGTTCTTTCAATCTTGGCAATGGACTACCCCATTGATAAGATATCATGCTACATTTCTGACGATGGAGCTTCAATGTGCACATTTGAAGCCCTGTCTGAAACGGCAGAGTTTGCTAGGAAGTGGGTGCCATTCTGTAAGAAATTTTTGATAGAACCTCGAGCACCAGAGAATTACTTTTCTGAGAAAATTGACTATCTAAAGGACAAGGTGCAACCCACTTTTGTCAAAGAACGTCGATCCATGAAGAGAGAATATGAAGAGTTTAAGGTAAGGATCAATGCACTTGTGGCAAAAGCCCAGAAGGTTCCACCAGGTGGGTGGATTATGCAGGATGGGACACCATGGCCAGGAAACAATACTAAGGATCATCCTGGTATGATTCAGGTCTTTCTTGGTCACAGTGGAGGTCATGATAGTGAAGGAAACCAGCTTCCTCGCCTTGTTTATGTATCCAGAGAGAAAAGGCCTGGATTTCAACACCACAAGAAAGCCGGTGCCATGAATGCTCTGGTTCGAGTCTCCGCTGTACTGACAAATGCTCCTTTCATGCTGAACTTGGATTGTGATCATTATATCAATAATAGCAAGGCTGTCCGAGAGGCCATGTGCTTCTTGATGGACCCCCAAACAGGGAAGAAGGTTTGCTATGTCCAGTTTCCTCAAAGATTCGATGGTATTGATGCACACGATCGATATGCCAATAGAAACACAGTTTTCTTTGATATTAACATGAAAGGTCTAGATGGTATCCAGGGTCCTGTATATGTCGGCACAGGGTGTGTATTTAGAAGGCAGGCTTTATATGGATATAGTCCTCCCAAGGGTCCCAAGCGTCCAAAAATGGTAAGCTGTGACTGCTGCCCATGTTTTGGAAGGCGCAAGAAGGTTAAGCATGCAATGAACGATGCAAATGGAGAGGTTGCAAGCCTAAGAGGAATGGATGATGACAAAGAATTAATGATGTCCCAGATGAATTTTGAGAAGAGATTTGGGCAGTCATCAATTTTTGTCACTTCAACCTTGATGGAAGAGGGTGGTGTACCTCCCTCCTCGAGTCCAGCAAGCCAGCTGAAAGAAGCTATTCATGTAATCAGTTGTGGATATGAAGATAAAACTGAATGGGGAATTGAGCTTGGTTGGATTTATGGGTCTATTACAGAGGATATTCTAACAGGCTTTAAGATGCATTGCCGTGGTTGGAGATCCATTTACTGTATGCCAAAGAGAGTAGCCTTCAAGGGTACTGCTCCTATCAACTTGTCAGATAGACTCAACCAGGTGCTTCGTTGGGCCCTTGGTTCCATTGAGATCTTCTTCAGTCATCATTGCCCTTTATGGTATGGCCACAAGGAAGGGAAGCTGAAGTGGCTGGAGCGATTTGCCTATGCAAACACAACCGTCTACCCCTTCACCTCCATACCTCTAGTTGCCTACTGTATTCTTCCTGCTGTCTGCTTACTCACTGACAAATTCATCATGCCACCGATAAGCACTTTTGCTAGTTTGTACTTTGTTGCTCTCTTCTCTTCAATCATGGCAACAGGCATTCTTGAGTTGAAATGGAGTGGAGTCAGCATTGAGGAATGGTGGAGAAATGAGCAATTCTGGGTCATTGGTGGTGTATCAGCACATCTCTTTGCTGTCATACAAGGTCTTCTGAAGGTTCTTGCTGGAATTGACACCAACTTCACTGTTACATCCAAGGCAACAGATGATGAGGAATTTGGAGAATTGTACGCCATTAAGTGGACTACTCTTCTAATTCCTCCAACCACTATCTTAATAATCAATATTGTTGGGGTTGTTGCTGGAATCTCAGATGCCATAAACAATGGGTACCAATCATGGGGACCTCTATTTGGAAAACTCTTCTTTTCATTCTGGGTGATTGTCCATCTGTATCCATTCCTTAAAGGTTTGATGGGTCGGCAAAACCGCACACCCACAATTGTTATTATATGGTCAGTGTTGTTGGCTTCCATTTTCTCCTTGCTATGGGTAAGAATTGACCCATTTGTGCTCAAAACTAAGGGACCAGATACCAAGCTATGTGGAATCAACTGTTAA 3207 0.4369 MEASAGLVAGSHNRNELVVIHGHEEHKPLKNLDGQVCEICGDDVGLTVDGDLFVACNECGFPVCRPCYEYERREGRQLCPQCKTRYKRLKGSPRVEGDDDEEDVDDIEHEFNIEDKINNHDHSAEAMLHGKMSYGRGPEDDENAHFPAVIAGGRSRNVRFAPLLIHLSLCRICNSIQLSFLVTCMQVSGEFPISSHGYGDQMLSSSLHKRVHPYSASDPRSAGWDERRDDGSYDRVDDWKLQQGNLGPEPDEDLDADMSDEARQPLSRKVPIASSKINPYRMVIVARLVILAFFLRYRLMNPVHDAMGLWLTSIICEIWFAISWILDQFPKWYPIDRETYLDRLSIRYEREGEPNMLAPVDVFVSTVDPLKEPPLNTANTVLSILAMDYPIDKISCYISDDGASMCTFEALSETAEFARKWVPFCKKFLIEPRAPENYFSEKIDYLKDKVQPTFVKERRSMKREYEEFKVRINALVAKAQKVPPGGWIMQDGTPWPGNNTKDHPGMIQVFLGHSGGHDSEGNQLPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNAPFMLNLDCDHYINNSKAVREAMCFLMDPQTGKKVCYVQFPQRFDGIDAHDRYANRNTVFFDINMKGLDGIQGPVYVGTGCVFRRQALYGYSPPKGPKRPKMVSCDCCPCFGRRKKVKHAMNDANGEVASLRGMDDDKELMMSQMNFEKRFGQSSIFVTSTLMEEGGVPPSSSPASQLKEAIHVISCGYEDKTEWGIELGWIYGSITEDILTGFKMHCRGWRSIYCMPKRVAFKGTAPINLSDRLNQVLRWALGSIEIFFSHHCPLWYGHKEGKLKWLERFAYANTTVYPFTSIPLVAYCILPAVCLLTDKFIMPPISTFASLYFVALFSSIMATGILELKWSGVSIEEWWRNEQFWVIGGVSAHLFAVIQGLLKVLAGIDTNFTVTSKATDDEEFGELYAIKWTTLLIPPTTILIINIVGVVAGISDAINNGYQSWGPLFGKLFFSFWVIVHLYPFLKGLMGRQNRTPTIVIIWSVLLASIFSLLWVRIDPFVLKTKGPDTKLCGINC* 1069
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g3231 1068 PANTHER CELLULOSE SYNTHASE A CATALYTIC SUBUNIT 7 [UDP-FORMING] 1 1068 - -
Tpr2g3231 1068 Pfam Cellulose synthase 360 1062 IPR005150 GO:0016020|GO:0016760|GO:0030244
Tpr2g3231 1068 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 507 651 IPR029044 -
Tpr2g3231 1068 MobiDBLite consensus disorder prediction 210 229 - -
Tpr2g3231 1068 CDD mRING-HC-C4C4_CesA_plant 35 85 - -
Tpr2g3231 1068 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 1 1068 - -
Tpr2g3231 1068 Coils Coil 458 478 - -
Tpr2g3231 1068 Pfam Zinc-binding RING-finger 27 104 IPR027934 -
Tpr2g3231 1068 SUPERFAMILY Nucleotide-diphospho-sugar transferases 374 858 IPR029044 -
Tpr2g3231 1068 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 20 109 IPR013083 -
Tpr2g3231 1068 ProSiteProfiles Zinc finger RING-type profile. 37 83 IPR001841 -
Tpr2g3231 1068 SUPERFAMILY RING/U-box 21 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g3231 Tpr-Chr2 36062213 36067597 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g3231 1 1068 Cell Wall Biosynthesis AT5G17420 82.788 0.0 1815
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g3231 K10999 - gmx:100779834 1990.31
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g3231 2 36062213 36067597 Tpr2g3231 2 36062213 36067597 ECH