LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tpr2g3231	ATGGAAGCCAGCGCCGGATTAGTCGCTGGTTCGCACAACCGTAATGAGCTTGTTGTCATTCATGGGCATGAAGAGCATAAGCCTTTGAAGAACTTGGATGGTCAAGTGTGTGAGATATGTGGTGATGATGTTGGACTCACTGTTGATGGAGATTTGTTTGTGGCATGTAACGAGTGCGGTTTTCCGGTGTGCCGACCATGCTATGAATATGAAAGAAGGGAGGGGAGACAACTTTGTCCTCAGTGCAAGACCAGATACAAGCGTCTCAAAGGGAGTCCTCGGGTTGAGGGAGATGACGATGAGGAGGACGTGGATGATATTGAACATGAATTTAACATTGAAGACAAAATTAACAATCATGATCATTCTGCTGAGGCTATGCTGCATGGGAAGATGAGCTATGGAAGAGGTCCTGAAGATGATGAGAATGCACACTTCCCAGCTGTTATTGCCGGTGGTCGCTCTCGGAATGTAAGATTTGCACCACTTTTAATCCATCTTAGCCTATGTAGAATTTGTAATTCAATACAACTAAGTTTTCTTGTCACATGCATGCAGGTGAGTGGTGAGTTTCCAATATCATCTCATGGTTATGGGGACCAGATGTTATCTTCTTCACTGCATAAAAGAGTTCATCCATATTCCGCTTCTGATCCTCGAAGTGCAGGATGGGATGAAAGAAGAGATGACGGATCATATGATAGAGTGGATGACTGGAAATTGCAGCAAGGAAATTTGGGACCTGAACCTGATGAAGATCTAGATGCAGACATGTCAGATGAAGCAAGACAACCACTGTCAAGGAAGGTACCAATAGCATCTAGCAAAATCAATCCATATAGGATGGTGATCGTGGCACGGCTTGTTATTCTTGCCTTCTTTCTGCGATACAGACTTATGAACCCAGTACATGATGCAATGGGGTTATGGCTAACTTCTATTATATGTGAAATCTGGTTTGCTATTTCTTGGATCCTTGATCAGTTTCCCAAATGGTACCCTATTGATCGAGAAACCTACCTTGATCGCCTTTCAATCAGGTATGAGCGTGAAGGCGAACCCAATATGCTTGCTCCTGTAGATGTGTTTGTCAGTACTGTGGATCCCTTGAAGGAACCTCCTCTGAATACAGCAAACACAGTTCTTTCAATCTTGGCAATGGACTACCCCATTGATAAGATATCATGCTACATTTCTGACGATGGAGCTTCAATGTGCACATTTGAAGCCCTGTCTGAAACGGCAGAGTTTGCTAGGAAGTGGGTGCCATTCTGTAAGAAATTTTTGATAGAACCTCGAGCACCAGAGAATTACTTTTCTGAGAAAATTGACTATCTAAAGGACAAGGTGCAACCCACTTTTGTCAAAGAACGTCGATCCATGAAGAGAGAATATGAAGAGTTTAAGGTAAGGATCAATGCACTTGTGGCAAAAGCCCAGAAGGTTCCACCAGGTGGGTGGATTATGCAGGATGGGACACCATGGCCAGGAAACAATACTAAGGATCATCCTGGTATGATTCAGGTCTTTCTTGGTCACAGTGGAGGTCATGATAGTGAAGGAAACCAGCTTCCTCGCCTTGTTTATGTATCCAGAGAGAAAAGGCCTGGATTTCAACACCACAAGAAAGCCGGTGCCATGAATGCTCTGGTTCGAGTCTCCGCTGTACTGACAAATGCTCCTTTCATGCTGAACTTGGATTGTGATCATTATATCAATAATAGCAAGGCTGTCCGAGAGGCCATGTGCTTCTTGATGGACCCCCAAACAGGGAAGAAGGTTTGCTATGTCCAGTTTCCTCAAAGATTCGATGGTATTGATGCACACGATCGATATGCCAATAGAAACACAGTTTTCTTTGATATTAACATGAAAGGTCTAGATGGTATCCAGGGTCCTGTATATGTCGGCACAGGGTGTGTATTTAGAAGGCAGGCTTTATATGGATATAGTCCTCCCAAGGGTCCCAAGCGTCCAAAAATGGTAAGCTGTGACTGCTGCCCATGTTTTGGAAGGCGCAAGAAGGTTAAGCATGCAATGAACGATGCAAATGGAGAGGTTGCAAGCCTAAGAGGAATGGATGATGACAAAGAATTAATGATGTCCCAGATGAATTTTGAGAAGAGATTTGGGCAGTCATCAATTTTTGTCACTTCAACCTTGATGGAAGAGGGTGGTGTACCTCCCTCCTCGAGTCCAGCAAGCCAGCTGAAAGAAGCTATTCATGTAATCAGTTGTGGATATGAAGATAAAACTGAATGGGGAATTGAGCTTGGTTGGATTTATGGGTCTATTACAGAGGATATTCTAACAGGCTTTAAGATGCATTGCCGTGGTTGGAGATCCATTTACTGTATGCCAAAGAGAGTAGCCTTCAAGGGTACTGCTCCTATCAACTTGTCAGATAGACTCAACCAGGTGCTTCGTTGGGCCCTTGGTTCCATTGAGATCTTCTTCAGTCATCATTGCCCTTTATGGTATGGCCACAAGGAAGGGAAGCTGAAGTGGCTGGAGCGATTTGCCTATGCAAACACAACCGTCTACCCCTTCACCTCCATACCTCTAGTTGCCTACTGTATTCTTCCTGCTGTCTGCTTACTCACTGACAAATTCATCATGCCACCGATAAGCACTTTTGCTAGTTTGTACTTTGTTGCTCTCTTCTCTTCAATCATGGCAACAGGCATTCTTGAGTTGAAATGGAGTGGAGTCAGCATTGAGGAATGGTGGAGAAATGAGCAATTCTGGGTCATTGGTGGTGTATCAGCACATCTCTTTGCTGTCATACAAGGTCTTCTGAAGGTTCTTGCTGGAATTGACACCAACTTCACTGTTACATCCAAGGCAACAGATGATGAGGAATTTGGAGAATTGTACGCCATTAAGTGGACTACTCTTCTAATTCCTCCAACCACTATCTTAATAATCAATATTGTTGGGGTTGTTGCTGGAATCTCAGATGCCATAAACAATGGGTACCAATCATGGGGACCTCTATTTGGAAAACTCTTCTTTTCATTCTGGGTGATTGTCCATCTGTATCCATTCCTTAAAGGTTTGATGGGTCGGCAAAACCGCACACCCACAATTGTTATTATATGGTCAGTGTTGTTGGCTTCCATTTTCTCCTTGCTATGGGTAAGAATTGACCCATTTGTGCTCAAAACTAAGGGACCAGATACCAAGCTATGTGGAATCAACTGTTAA	3207	0.4369	MEASAGLVAGSHNRNELVVIHGHEEHKPLKNLDGQVCEICGDDVGLTVDGDLFVACNECGFPVCRPCYEYERREGRQLCPQCKTRYKRLKGSPRVEGDDDEEDVDDIEHEFNIEDKINNHDHSAEAMLHGKMSYGRGPEDDENAHFPAVIAGGRSRNVRFAPLLIHLSLCRICNSIQLSFLVTCMQVSGEFPISSHGYGDQMLSSSLHKRVHPYSASDPRSAGWDERRDDGSYDRVDDWKLQQGNLGPEPDEDLDADMSDEARQPLSRKVPIASSKINPYRMVIVARLVILAFFLRYRLMNPVHDAMGLWLTSIICEIWFAISWILDQFPKWYPIDRETYLDRLSIRYEREGEPNMLAPVDVFVSTVDPLKEPPLNTANTVLSILAMDYPIDKISCYISDDGASMCTFEALSETAEFARKWVPFCKKFLIEPRAPENYFSEKIDYLKDKVQPTFVKERRSMKREYEEFKVRINALVAKAQKVPPGGWIMQDGTPWPGNNTKDHPGMIQVFLGHSGGHDSEGNQLPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNAPFMLNLDCDHYINNSKAVREAMCFLMDPQTGKKVCYVQFPQRFDGIDAHDRYANRNTVFFDINMKGLDGIQGPVYVGTGCVFRRQALYGYSPPKGPKRPKMVSCDCCPCFGRRKKVKHAMNDANGEVASLRGMDDDKELMMSQMNFEKRFGQSSIFVTSTLMEEGGVPPSSSPASQLKEAIHVISCGYEDKTEWGIELGWIYGSITEDILTGFKMHCRGWRSIYCMPKRVAFKGTAPINLSDRLNQVLRWALGSIEIFFSHHCPLWYGHKEGKLKWLERFAYANTTVYPFTSIPLVAYCILPAVCLLTDKFIMPPISTFASLYFVALFSSIMATGILELKWSGVSIEEWWRNEQFWVIGGVSAHLFAVIQGLLKVLAGIDTNFTVTSKATDDEEFGELYAIKWTTLLIPPTTILIINIVGVVAGISDAINNGYQSWGPLFGKLFFSFWVIVHLYPFLKGLMGRQNRTPTIVIIWSVLLASIFSLLWVRIDPFVLKTKGPDTKLCGINC*	1069

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tpr2g3231	1068	PANTHER	CELLULOSE SYNTHASE A CATALYTIC SUBUNIT 7 [UDP-FORMING]	1	1068	-	-
	Tpr2g3231	1068	Pfam	Cellulose synthase	360	1062	IPR005150	GO:0016020\|GO:0016760\|GO:0030244
	Tpr2g3231	1068	Gene3D	Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A	507	651	IPR029044	-
	Tpr2g3231	1068	MobiDBLite	consensus disorder prediction	210	229	-	-
	Tpr2g3231	1068	CDD	mRING-HC-C4C4_CesA_plant	35	85	-	-
	Tpr2g3231	1068	PANTHER	X-BOX TRANSCRIPTION FACTOR-RELATED	1	1068	-	-
	Tpr2g3231	1068	Coils	Coil	458	478	-	-
	Tpr2g3231	1068	Pfam	Zinc-binding RING-finger	27	104	IPR027934	-
	Tpr2g3231	1068	SUPERFAMILY	Nucleotide-diphospho-sugar transferases	374	858	IPR029044	-
	Tpr2g3231	1068	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	20	109	IPR013083	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Tpr2g3231	Tpr-Chr2	36062213	36067597	Dispersed/Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tpr2g3231	1	1068	Cell Wall Biosynthesis	AT5G17420	82.788	0.0	1815

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tpr2g3231	K10999		-	gmx:100779834	1990.31

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Tpr2g3231	2	36062213	36067597	Tpr2g3231	2	36062213	36067597	ECH

Showing 1 to 1 of 1 entries