Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g3216 ATGTTTGATGGCGGTGATTACAAGTCACAGTACATGGGCGGCCAGCGAGAAAATTCTTTTAGGTGGGATGTCTTGGATTCTAGGCTATCATCATCTTCTGATGTCAGAGTCACCAAATCTGGATTTAGTATTGATAAATTAAGCCATGGTGGTCATAGAAGCAGCACAACCTCTAGGTCTTTTAAAAAAGGAATGAGGAGGGGGTCTGAAGGACTGAAGTCAATTGGTCGATCACTTGGACTTGGGGTATCTAGGGCGGTGTTTCCAGAAGATCTTAAAGTGTCTGAAAAGAAGATATTTGATCCCCAAGACAAATTTTTACTCTTTTGGAATAAGTTATTTGTTATCTCATGCATTTTATCTGTGTCTGTGGATCCACTGTTTTTTTATCTCCCTGTCATCAATGATCAATTACACTGTCTGGGTATAGATCGAAAGTTGGCGACAATAGTCACCACCTTGAGGACAATCATTGATGCTTTCTATCTTATACACATGGCTCTCCAATTTCGTACTGCTTACATTGCTCCATCATCTCGTGTCTTTGGGCGGGGTGAGCTTGTGATAGATTCAGTACAGATAGCCAAGCGATACTTGCGACGATATTTCATCATCGATTTCCTATCGGTGTTGCCGGTACCACAGATTGTTGTTTGGAGATTTCTTCAGAGGTCAAAAAGTTCAGATGTACTAGCAACAAAGCAGGCCTTGCTGTTCATTATCTTGCTTCAGTATGTTCCTAGATTTCTTCGAATGGTACCGTTAACCTCAGAGCTTAAGAGAACAGCTGGTGTCTTTGCTGAAACTGCATGGGCAGGTGCTGCATATTATTTGATGTTATACATGCTTGCCAGTCATATAGTTGGTTCTTTTTGGTACTTGTTAGCTATTGAACGCAATGACTCGTGCTGGCAGAAGGCTTGCAGTGACAATGGGTGCAAAAAAAACTACCTGTATTGTGAGAACCAGCATACGGAAGGTTACAGTGCCTGGCAAAATAAAAGCAAAGATATTTTTAAGTCAAAGTGCTCTGTAGATGATAAACCTCCACCTTTTGATTATGGTATTTTTACACAAGCCTTGTCATCTGGTATCATTTCATCCAAGACATTCATCTCGAAGTATTGTTATTGTTTATGGTGGGGGCTCCAAAATTTAAGTACCCTTGGTCAGGGGCTTCAGACTAGCACCTATCCTGGGGAAGTTATCTTTTCAATAGCACTTGCCATAGCAGGCCTCATCCTCTTTGCACTTCTGATTGGCAACATGCAGACATATCTTCAATCCCTTACCCTCAGGCTTGAGGAAATGAGAGTCAAAAGGCGTGATTCAGAACAGTGGATGCATCACCGCTTGCTCCCAAAAGAGCTGAGAGAGCGTGTGAGACGATATGATCAATATAAGTGGTTGGCAACACGTGGTGTAGATGAAGATATTTTAGTTCAGAGTTTACCAAAGGATCTTCGAAGAGATATTAAGCGTCATCTTTGTTTGGCTTTAGTGAGGAGGGTTCCACTATTTGAGAGTATGGATGAGAGATTGCTTGATGCCATATGTGAGAGACTGAAACCATGTTTATTTACAGAAAGTACTTATATTGTTCGGGAAGGAGATCCAGTCGATGAGATGCTTTTCATCATACGTGGACGCCTTGAGAGTGTAACCACGGATGGTGGGAGGAGTGGCTTTTTCAACCGCGGTTTTCTAAAAGAGGCTGACTTCTGTGGGGAGGAGCTTTTAACCTGGGCCCTAGACCCCAAATCTGGTTCTAATCTTCCATCTTCTACTCGAACAGTTAAGGCATTAACAGAGGTTGAAACATTTGCCTTAACTGCCGATGAGCTGAAATTTGTTGCCAGTCAGTTTAGGCGTCTTCACAGTAGACAGGTTCAACACACTTTTCGTTTTTACTCTCAGCAATGGAGAACTTGGGCTGCATGCTTTATTCAAGCAGCATGGCGTCGATATTGCAAAAAGAAAATTATGAAGCTTCGTCAAAAGGAAGAAGAAGCAGATGAGTCAGAAGGAACTCATGGCAACACTGGTGGTAGTTCCTCCAGCCTTGGTGCTGCCTTATTAGTCTCAAAGTTTGCCGCGCACACTCTCCGTGGTGTACACCGCAATAGACTTGCCAAGACTGCTAGGGAATTGGTGAAATTACAGAAACCCCCCGAGCCTGACTTTACAGCAGATGATGCAGACTAA 2205 0.4277 MFDGGDYKSQYMGGQRENSFRWDVLDSRLSSSSDVRVTKSGFSIDKLSHGGHRSSTTSRSFKKGMRRGSEGLKSIGRSLGLGVSRAVFPEDLKVSEKKIFDPQDKFLLFWNKLFVISCILSVSVDPLFFYLPVINDQLHCLGIDRKLATIVTTLRTIIDAFYLIHMALQFRTAYIAPSSRVFGRGELVIDSVQIAKRYLRRYFIIDFLSVLPVPQIVVWRFLQRSKSSDVLATKQALLFIILLQYVPRFLRMVPLTSELKRTAGVFAETAWAGAAYYLMLYMLASHIVGSFWYLLAIERNDSCWQKACSDNGCKKNYLYCENQHTEGYSAWQNKSKDIFKSKCSVDDKPPPFDYGIFTQALSSGIISSKTFISKYCYCLWWGLQNLSTLGQGLQTSTYPGEVIFSIALAIAGLILFALLIGNMQTYLQSLTLRLEEMRVKRRDSEQWMHHRLLPKELRERVRRYDQYKWLATRGVDEDILVQSLPKDLRRDIKRHLCLALVRRVPLFESMDERLLDAICERLKPCLFTESTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRGFLKEADFCGEELLTWALDPKSGSNLPSSTRTVKALTEVETFALTADELKFVASQFRRLHSRQVQHTFRFYSQQWRTWAACFIQAAWRRYCKKKIMKLRQKEEEADESEGTHGNTGGSSSSLGAALLVSKFAAHTLRGVHRNRLAKTARELVKLQKPPEPDFTADDAD* 735
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g3216 734 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 17 731 - -
Tpr2g3216 734 Gene3D - 112 431 - -
Tpr2g3216 734 MobiDBLite consensus disorder prediction 46 68 - -
Tpr2g3216 734 SUPERFAMILY cAMP-binding domain-like 435 626 IPR018490 -
Tpr2g3216 734 SUPERFAMILY Voltage-gated potassium channels 101 428 - -
Tpr2g3216 734 CDD CAP_ED 506 637 IPR000595 -
Tpr2g3216 734 Pfam Cyclic nucleotide-binding domain 528 617 IPR000595 -
Tpr2g3216 734 Gene3D Jelly Rolls 504 624 IPR014710 -
Tpr2g3216 734 PANTHER NUCLEOTIDE-GATED ION CHANNEL, PUTATIVE-RELATED 17 731 - -
Tpr2g3216 734 Pfam Ion transport protein 109 433 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Tpr2g3216 734 Gene3D Helix hairpin bin 434 497 - -
Tpr2g3216 734 SMART cnmp_10 506 637 IPR000595 -
Tpr2g3216 734 MobiDBLite consensus disorder prediction 715 734 - -
Tpr2g3216 734 ProSiteProfiles cAMP/cGMP binding motif profile. 506 636 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g3216 Tpr-Chr2 35956360 35963468 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g3216 12 731 Ion Channels AT5G57940 77.040 0.0 1138
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g3216 K05391 - gmx:100784327 1274.23
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g3216 2 35956360 35963468 Tpr2g3216 2 35956360 35963468 ECH