Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g3210 ATGGGTTTAGGAGTATTTGGATCTGTTCTTATTTTAACATTTTTGTTCAAGCATTTAGCTTCTCAGCAACCAAACACTGATGAATTTTATGTATCTGAGTTTTTGAAGAAAATGGGTTTAACATCATCCTCAAAAGATTACAACTTTTCATCTTCTGTTTGTTCATGGAAAGGTGTTTTCTGTGATTCAAATAAAGTATATGTTTTTCAGTTAAACTTTTCTGGTATTGGTCTCACTGGTCCTATTCCTGATACAACCTTAGGAAAACTTAGCAAACTTCAATCTTTGGATCTTAGCAAAAACAAAATCACTTCTTTGCCTTCAGATTTTTGGAGTTTAAACTCTCTCAAAAGCCTTAACCTTTCTTCCAATCAAATTTCAGGTTCATTGACTAACAACATTGGAAACTTTGGTTTACTTGAAAACTTTGACTTGTCAAAAAACAATTTCTCTGATGAAATTCCTGAAGCTTTGAGTTCCCTTGTGAATTTGAAGGTTCTTAAACTTCACCATAACATGTTTGTTAAAAGTATTCCTTCAGGAATTCTCAAGTGTGAGTCTCTAGTTTCAATTGACCTTTCATCAAATCAACTGAGTGGAACACTTCCACATGGTTTCGGTGATGTTTTTCCTAAGCTTAGGACTGTGAATCTTGCCGAGAATAATATCGATGGAGGTGTCTCGGATTTTTCAGGGTTAAAGTCCATTTTGAGTCTTAATATATCAGGAAATTCATTTCAGGGTTCTATTGTTGAAGTCTTTGAGTTAAAGTTGGAGGTTTTGGACCTTAGCAGAAACCAATTTCAAGGTCACATTTCTCAGGTACATTACAATTGGTCTCATTTAGTTTATCTGGATTTGTCTGAGAATCAACTTAGTGGTGAAATTTTCCAAAATTTGAACAATTCAGTGAATTTAAAGCACCTTAATCTTGCATGCAATAGATTTACAAGACAGAAATTCCCACAGATTGAAATACTATTAGGATTGGAATATCTTAACTTGTCCAAAACTAGTCTTGTTGGTCACATTCCTGACAATATCTCAAAACTTGGTAATTTGAATGCACTTGATCTTTCTATGAATCATCTTGATGGGAAAATTCCCTTTTTGAAGAATAAACACCTCCAAGTTATTGACCTTTCACATAACAATTTGAGTGGACCAGTCCCTTCATCTGTCTTGGAAAATCTCCCAAAGATGAAGAAATACAACTTCTCTTATAATAACTTAACCCTTTGTGCATCAGAAATCAAATCCGATGTCCTGCAAACATCGTTCTTTGGATCAGTTAACAGTTGTCCAATAGCTGCGAATCCGAGTTTTTTCAAAAGAAGAAGAGACACTCACCACAAGGGAATGAAGTTAGCTCTTGTATTGACCATTGTATTGATATTCGCGCTTGCCGGGATTTTGTTTATAGCATTCGGTTGCAGAAGGAAACAGAAAATGTGGGAAGTAAAGCCAGGTTCATACAGAGAAGAACAGAATATCTCAGGTCCATTTTCCTTCCAAACTGATTCAACAACTTGGGTGGCTGATGTGAAACAAGCAACATCAGTTCCAGTAGTAATCTTTGAGAAGCCGTTGTTGAATATAACCTTTGCAGATCTCTTATCTGCAACTTCAAATTTCGACAGAGGTACCCTTTTGGCTGAAGGAAAATTTGGACCTGTTTATAGAGGCTTTCTACCAGGAAATATTCATGTTGCAGTTAAAGTTTTGGTTGTTGGTTCTACATTAACAGATGAAGAAGCTGCTAGAGAGCTTGAGTTTCTTGGTAGAATCAAGCACCCTAATCTAGTTCCTTTAACTGGTTATTGTGTAGCTGGTGATCAAAGAATTGCTATATATGATTACATGGAGAATGGAAACTTGCAAAACCTTCTTTATGATTTGCCACTCGGTGTTCAAAGCACAGATGATTGGAGCACAGACACATGGGAAGAAGCTGCTGATAGTAATGGAATTCAAAATGTTGGTTCTGAAGGATTACTCACAACTTGGCGATTTCGACACAAAATCGCTCTTGGAACTGCAAGAGCATTGGCATTTCTTCACCATGGATGCTCTCCTCCAATGATTCACAGAGCTGTTAAAGCTAGCAGTGTTTATTTGGATTATGATTTGGAGCCTAGGTTGTCTGATTTTGGACTTGCAAAGATTTTCGGAAGTGGTTTGGACGAAGAGATTGCGCGTGGTTCACCTGGTTATGTTCCACCGGAGTTTTCTCAACCGGAATTTGATGACTCTCCAACCCCGAAATCTGATGTATATTGTTTTGGTGTTGTTCTGTTTGAGCTACTAACTGGAAAGAAACCGGTTGGAGATGATTATACTGATGACAAAGAAGCAACGACTTTGGTAAGTTGGGTTAGAGGACTTGTAAGGAAGAATCAAACTTCAAGAGCTATTGATCATAAAATTCGCGATACAGGATTGGATGAACAAATGGAGGAAGCTCTTAAGATTGGATATCTATGCACGGCTGATTTACCTTTCAAGAGACCAACCATGCAGCAGATAGTTGGACTTCTAAAGGATATTGAACCTACAACTAGTTAG 2565 0.3708 MGLGVFGSVLILTFLFKHLASQQPNTDEFYVSEFLKKMGLTSSSKDYNFSSSVCSWKGVFCDSNKVYVFQLNFSGIGLTGPIPDTTLGKLSKLQSLDLSKNKITSLPSDFWSLNSLKSLNLSSNQISGSLTNNIGNFGLLENFDLSKNNFSDEIPEALSSLVNLKVLKLHHNMFVKSIPSGILKCESLVSIDLSSNQLSGTLPHGFGDVFPKLRTVNLAENNIDGGVSDFSGLKSILSLNISGNSFQGSIVEVFELKLEVLDLSRNQFQGHISQVHYNWSHLVYLDLSENQLSGEIFQNLNNSVNLKHLNLACNRFTRQKFPQIEILLGLEYLNLSKTSLVGHIPDNISKLGNLNALDLSMNHLDGKIPFLKNKHLQVIDLSHNNLSGPVPSSVLENLPKMKKYNFSYNNLTLCASEIKSDVLQTSFFGSVNSCPIAANPSFFKRRRDTHHKGMKLALVLTIVLIFALAGILFIAFGCRRKQKMWEVKPGSYREEQNISGPFSFQTDSTTWVADVKQATSVPVVIFEKPLLNITFADLLSATSNFDRGTLLAEGKFGPVYRGFLPGNIHVAVKVLVVGSTLTDEEAARELEFLGRIKHPNLVPLTGYCVAGDQRIAIYDYMENGNLQNLLYDLPLGVQSTDDWSTDTWEEAADSNGIQNVGSEGLLTTWRFRHKIALGTARALAFLHHGCSPPMIHRAVKASSVYLDYDLEPRLSDFGLAKIFGSGLDEEIARGSPGYVPPEFSQPEFDDSPTPKSDVYCFGVVLFELLTGKKPVGDDYTDDKEATTLVSWVRGLVRKNQTSRAIDHKIRDTGLDEQMEEALKIGYLCTADLPFKRPTMQQIVGLLKDIEPTTS* 855
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g3210 854 ProSiteProfiles Leucine-rich repeat profile. 92 113 IPR001611 GO:0005515
Tpr2g3210 854 SUPERFAMILY L domain-like 45 414 - -
Tpr2g3210 854 Pfam Leucine Rich repeat 372 388 IPR001611 GO:0005515
Tpr2g3210 854 Pfam Leucine Rich repeat 280 295 IPR001611 GO:0005515
Tpr2g3210 854 SMART LRR_sd22_2 279 302 - -
Tpr2g3210 854 SMART LRR_sd22_2 373 400 - -
Tpr2g3210 854 SMART LRR_sd22_2 90 108 - -
Tpr2g3210 854 Pfam Protein tyrosine and serine/threonine kinase 549 844 IPR001245 GO:0004672|GO:0006468
Tpr2g3210 854 Gene3D Ribonuclease Inhibitor 179 253 IPR032675 -
Tpr2g3210 854 Pfam Leucine rich repeat 187 245 IPR001611 GO:0005515
Tpr2g3210 854 Pfam Leucine rich repeat 82 126 IPR001611 GO:0005515
Tpr2g3210 854 Gene3D Ribonuclease Inhibitor 323 435 IPR032675 -
Tpr2g3210 854 PRINTS Leucine-rich repeat signature 93 106 - -
Tpr2g3210 854 PRINTS Leucine-rich repeat signature 113 126 - -
Tpr2g3210 854 SUPERFAMILY Protein kinase-like (PK-like) 522 846 IPR011009 -
Tpr2g3210 854 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 1 851 - -
Tpr2g3210 854 SMART LRR_typ_2 113 137 IPR003591 -
Tpr2g3210 854 SMART LRR_typ_2 90 112 IPR003591 -
Tpr2g3210 854 SMART LRR_typ_2 327 351 IPR003591 -
Tpr2g3210 854 SMART LRR_typ_2 161 185 IPR003591 -
Tpr2g3210 854 Gene3D Ribonuclease Inhibitor 254 322 IPR032675 -
Tpr2g3210 854 PANTHER CONCANAVALIN A-LIKE LECTIN/GLUCANASE DOMAIN-CONTAINING PROTEIN-RELATED 1 851 - -
Tpr2g3210 854 Gene3D Phosphorylase Kinase; domain 1 505 620 - -
Tpr2g3210 854 ProSiteProfiles Protein kinase domain profile. 545 853 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr2g3210 854 Gene3D Transferase(Phosphotransferase) domain 1 621 854 - -
Tpr2g3210 854 Gene3D Ribonuclease Inhibitor 31 178 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g3210 Tpr-Chr2 35916348 35919658 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g3210 78 849 Receptor kinase-like Gene Family AT5G07280 32.646 8.78e-107 354
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-2 Tpr2g3210 PK_Tyr_Ser-Thr 2.5e-30 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g3210 - - gmx:100797738 1380.54