LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tpr2g3201	ATGGCTGCTACTGGAGTTCTTGCAGAGATTTTAGATGGAGATGTATACAAATATTATGCTGATGGTGAATGGAAAAAATCTACCTCTGGTAAAAGTGTTTCTATCATTAACCCTACTACTAGAAAGCCTCAATACAAAGTTCAAGCTTGTTCACAAGAGGAGGTTAATAAGGTTATGGATTCAGCAAAATCGGCACAAAAGTCATGGGCAAAGACTCCACTTTGGAAGAGAGCTGAACTGCTTCACAAGGCAGCTGCAATCCTCAAAGAACACAAAGCTGCAATTGCAGAATGCTTAGTCAAAGAAATAGCAAAACCAGCCAAAGATGCAGTTACAGAGGTTGTAAGATCTGGTGATTTGGTTTCTTACTGTGCTGAAGAAGGAGTAAGAATTCTTGGAGAGGGAAAGTTCTTGGTTTCAGATAGCTTTCCTGGAAATGAAAGGACCAAATATTGTCTCACATCCAAGATACCATTAGGAGTGATTTTAGCCATTCCGCCTTTTAATTATCCGGTCAATCTTGCTGTCTCAAAAATTGCTCCTGCACTGATTGCTGGAAATTCTATTGTACTCAAGCCTCCAACTCAGGGAGCTGTTGCTGCTCTTCACATGGTTCACTGCTTTCACTTGGCTGGTTTTCCCAAAGGCCTAATCAGCTGTGTTACCGGAAAAGGTTCTGAAATTGGTGATTTTCTTACAATGCATCCAGGAGTGAACTGTATAAGCTTCACTGGTGGAGATACTGGCATTGCAATTTCAAAGAAGGCAGGAATGATTCCTCTACAAATGGAATTGGGAGGAAAAGATGCTTGCATTGTACTTGAGGATGCTGATCTTGATTTGGTTGCTGCAAACATTATAAAAGGAGGTTTTTCATACAGTGGTCAGAGGTGTACTGCTGTTAAGGTTGTCCTGGTAATTGAATCAGTTGCCGATGCTTTGGTTGAGAAAGTGAATGCTAAGGTTGCAAAACTAAGTGTTGGAGCACCCGAAGATGACAGCGATATCACCCCAGTTGTATCAGAATCATCAGCCAATTTCATCGAAGGCCTTGTCAATGATGCTAAACAGAAAGGAGCAACATTCTGCCAAGAATACAAAAGAGAAGGAAATCTCATTTGGCCTTTGTTATTGGATAATGTTAGGCCAGACATGAGAATTGCATGGGAGGAGCCATTTGGACCAGTTTTGCCGGTAATTAGGATCAATTCTGTTGAAGAAGGAATCCACCATTGTAATGCTAGCAACTTTGGACTTCAGGGATGTGTATTCACAAAGGATATCAACAAAGCAATGCTGATTAGTGATGCAATGGAATCAGGAACAATTCAGATAAATTCTGCCCCAGCTCGGGGGCCAGATCATTTTCCCTTTCAGGGTATAAAGGACAGTGGAATTGGATCACAAGGAATTACCAACAGCATAAACATGATGACCAAAATCAAAACTACTGTGATAAACTTGCCAAGCCCTTCTTATACCATGGGATAA	1491	0.4105	MAATGVLAEILDGDVYKYYADGEWKKSTSGKSVSIINPTTRKPQYKVQACSQEEVNKVMDSAKSAQKSWAKTPLWKRAELLHKAAAILKEHKAAIAECLVKEIAKPAKDAVTEVVRSGDLVSYCAEEGVRILGEGKFLVSDSFPGNERTKYCLTSKIPLGVILAIPPFNYPVNLAVSKIAPALIAGNSIVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPGVNCISFTGGDTGIAISKKAGMIPLQMELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLVIESVADALVEKVNAKVAKLSVGAPEDDSDITPVVSESSANFIEGLVNDAKQKGATFCQEYKREGNLIWPLLLDNVRPDMRIAWEEPFGPVLPVIRINSVEEGIHHCNASNFGLQGCVFTKDINKAMLISDAMESGTIQINSAPARGPDHFPFQGIKDSGIGSQGITNSINMMTKIKTTVINLPSPSYTMG*	497

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Tpr2g3201	496	SUPERFAMILY	ALDH-like	15	487	IPR016161	GO:0016491
Tpr2g3201	496	ProSitePatterns	Aldehyde dehydrogenases cysteine active site.	291	302	IPR016160	GO:0016491
Tpr2g3201	496	CDD	ALDH_F11_NP-GAPDH	15	487	-	-
Tpr2g3201	496	Gene3D	Aldehyde Dehydrogenase; Chain A, domain 1	22	483	IPR016162	GO:0016491
Tpr2g3201	496	PANTHER	ALDEHYDE DEHYDROGENASE	1	496	-	-
Tpr2g3201	496	PANTHER	NADP-DEPENDENT GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE	1	496	-	-
Tpr2g3201	496	Pfam	Aldehyde dehydrogenase family	24	483	IPR015590	GO:0016491
Tpr2g3201	496	Gene3D	Aldehyde Dehydrogenase; Chain A, domain 2	267	457	IPR016163	GO:0016620
Tpr2g3201	496	ProSitePatterns	Aldehyde dehydrogenases glutamic acid active site.	263	270	IPR029510	GO:0016491

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Tpr2g3201	Tpr-Chr2	35794704	35798806	Dispersed/Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tpr2g3201	1	496	Aldehyde Dehydrogenase Gene Family	AT2G24270	89.113	0.0	933

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tpr2g3201	K00131		-	gmx:100789100	945.266

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Tpr2g3201	2	35794704	35798806	Tpr2g3201	2	35794704	35798806	ECH

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