Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g3200 ATGTCTATAAGAAAACTCCCATTCCCTCGGCTCCTCCTTAACAATGTTTCTTGCATGAGAAATGGCCAGCAAATTCTGTCTCACGTGAATGTCACTCTTCATGATGGAGGGGCATTTGTGCTAACAGGTGCAAATGGCTCAGGAAAGACAACTTTCATGCGCTTGCTAGCTGGGTTTTCTCGTCCTTCTGCCGGTGAAGTCCTTTGGAATGGCCATGACATTCAAAAATCTGCAATCTTCCATCAGTATAAACTTCAGCTTAACTGGGTCTCCCTCAGGGATGCAATTAATGACAAGTTTAATGTTCTGGACAATATTCAATGGTTTGAACTTCTTGAAGGCAAGCACGGGAAGGCTATGCCTGCGCTTGAGTTTATGGGACTAGGAAGATTGGCTAAGGAAAAGCCAAAGGTGCTTTCAATGGGCCAGCGAAAAAGATTGCAACTTGCCAGAATGCTCGCAATGGATCGCCCCATATGGTTGCTAGATGAGCCTTCAGTTGCATTAGATGATGAAGGTGTAAAGTTACTCGAGTACATTATTGCAGAACACAGGAAACAAGGAGGAATTGTTATTGTAGCAACTCATTTACCCATTGAGATAGAAGATTCCATGGTCTTGAAGCTGCCGCCAAGGTTTCCAAGGAGCATGACACATACAGATATGCTTGGCCGGGAGGTGAATATTAGTTAA 693 0.4401 MSIRKLPFPRLLLNNVSCMRNGQQILSHVNVTLHDGGAFVLTGANGSGKTTFMRLLAGFSRPSAGEVLWNGHDIQKSAIFHQYKLQLNWVSLRDAINDKFNVLDNIQWFELLEGKHGKAMPALEFMGLGRLAKEKPKVLSMGQRKRLQLARMLAMDRPIWLLDEPSVALDDEGVKLLEYIIAEHRKQGGIVIVATHLPIEIEDSMVLKLPPRFPRSMTHTDMLGREVNIS* 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g3200 230 TIGRFAM ccmA: heme ABC exporter, ATP-binding protein CcmA 13 209 IPR005895 GO:0017004|GO:0022857
Tpr2g3200 230 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 10 202 IPR027417 -
Tpr2g3200 230 PANTHER ABC TRANSPORTER I FAMILY MEMBER 1 9 223 IPR005895 GO:0017004|GO:0022857
Tpr2g3200 230 Pfam ABC transporter 26 166 IPR003439 GO:0005524
Tpr2g3200 230 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 11 229 IPR003439 GO:0005524
Tpr2g3200 230 Gene3D - 8 210 IPR027417 -
Tpr2g3200 230 SMART AAA_5 35 223 IPR003593 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g3200 Tpr-Chr2 35783350 35787853 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g3200 24 178 Calmodulin-binding Proteins AT2G36910 30.120 3.89e-11 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g3200 - - cpap:110815669 384.415