Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g3186 ATGGACACTCATAATAATACTCTCTCAGTATCATCACATCTTCTTCTTCTTCATCCTCTTCGTCTTCTTTCTTCTTCTTCTTCTTCTTGTTACATCCCTCGTTCACATAACAACAATCATTTTCTGAAACTATTTTCTCCCAATCACATTAACCGTTTCTCCAACTTCACAACAACTCCACTACCCGCCATTGCAAATCCTTCTCCTACAACTCCCACTCTCAGAGATATATGTCAACCTCACGTACCTGACCAATTCCTGCAAAGGATGGAAGAGGTTGGATATGTAATGCCTACAGAGGTACAGAAGCAAGCATTGCCTCATCTCTTTTCTGGCCATGATTGCATACTTCATGCTCAGACAGGTTCTGGGAAGACACTTGCATACTTGCTTTTGATTTATTCCATCATCAACACTAAAAAATCTTCTTTTCAAGCACTAGTTTTGGTGCCCACCCGTGAACTTGGCATGCAAGTTGCCAAGGTAGCTAGGATACTGGCAGCAAAGCCATCCGGAGTTGAAGGGGAGCAGAGGTTATGTACCATCATGGCTCTGTTAGATGGAGGAACATTGAGAAGGCACAAGAGTTGGTTTAAGGCAGAGCCTCCAGCAATAGTGGTTGCAACAGTTGAGAGTTTGTGCCAAATGCTTGAAAAACAACTTTTTTCGCTTGGAACCTTGCGGGTGTTGGTCGTGGATGAGGTTGACTTCATTTTCAATTCTTCAAAGCAAGTGAGTTCTCTCCGCAAGATTTTGACCTCATATTCGTCTTGTAATAACCGTCAGACAGTTTTTGCCAGTGCATCTATACCACAGCACAATCGATTTATTAACGAAGCTATGCAGCAGAAATGGACTAAGAGGGATGTGGTCCATATTCAAGTTAGTCCGGTGGAGCCCATGCCATCTCGCCTATATCATAGATTTATAGTATGTGATACGAAGAGAAAACTACAAACCCTGTTATCCTTGATTCAATCTGATGCTCCTGAGTCTGGCATTATATTCGTTGGTGAGCAGTCTGAGAAGTCGAAAAAGGCTGGAAATGCTCCATCCACATCCCTTGTGATTGACTTTCTAAAGACATCATATCACGGTTCTTTAGATATCCTCCTCCTCGAAGATGACATGAATTTCAATTCACGAGCAGCTTCTCTGTTGGAGGTTAGGAAAGGTGGCGGCTATCTTCTAGTGGCAACAGATGTGGCTGCTAGAGGAGTCGACTTTCCAGAAATGACTCACATATACAACTTTGATCTGCCAAAAACTGCCATAGATTATCTTCATCGAGCAGGGAGGACTTGTAGAAAACCCTTTTCTGACGTCAATTGTTCTGTCACCAGCATTATAGTCTCTGAGGAGCGGTTTGTTCTGAAGAAGTATGAAAATGAGTTGATGTTTGTGTGTGAAGAGCTTATTGAATAA 1425 0.4239 MDTHNNTLSVSSHLLLLHPLRLLSSSSSSCYIPRSHNNNHFLKLFSPNHINRFSNFTTTPLPAIANPSPTTPTLRDICQPHVPDQFLQRMEEVGYVMPTEVQKQALPHLFSGHDCILHAQTGSGKTLAYLLLIYSIINTKKSSFQALVLVPTRELGMQVAKVARILAAKPSGVEGEQRLCTIMALLDGGTLRRHKSWFKAEPPAIVVATVESLCQMLEKQLFSLGTLRVLVVDEVDFIFNSSKQVSSLRKILTSYSSCNNRQTVFASASIPQHNRFINEAMQQKWTKRDVVHIQVSPVEPMPSRLYHRFIVCDTKRKLQTLLSLIQSDAPESGIIFVGEQSEKSKKAGNAPSTSLVIDFLKTSYHGSLDILLLEDDMNFNSRAASLLEVRKGGGYLLVATDVAARGVDFPEMTHIYNFDLPKTAIDYLHRAGRTCRKPFSDVNCSVTSIIVSEERFVLKKYENELMFVCEELIE* 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g3186 474 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 44 473 - -
Tpr2g3186 474 CDD DEADc 87 272 - -
Tpr2g3186 474 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 106 288 IPR014001 -
Tpr2g3186 474 Gene3D - 55 290 IPR027417 -
Tpr2g3186 474 SMART helicmild6 354 438 IPR001650 -
Tpr2g3186 474 Gene3D - 302 471 IPR027417 -
Tpr2g3186 474 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 317 474 IPR001650 -
Tpr2g3186 474 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 58, CHLOROPLASTIC 44 473 - -
Tpr2g3186 474 Pfam Helicase conserved C-terminal domain 317 436 IPR001650 -
Tpr2g3186 474 SMART ultradead3 94 309 IPR014001 -
Tpr2g3186 474 CDD SF2_C_DEAD 307 436 - -
Tpr2g3186 474 Pfam DEAD/DEAH box helicase 99 272 IPR011545 GO:0003676|GO:0005524
Tpr2g3186 474 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 107 440 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g3186 Tpr-Chr2 35713291 35717962 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g3186 83 472 Eukaryotic Initiation Factors Gene Family AT1G72730 26.582 1.07e-26 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g3186 - - mtr:MTR_4g131750 748.814