Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g3170 ATGATGCAACCTGGAGGACCTGGCATGGCTCCACACACAATCCCCCAACAATACCAACAACAACAACAACAACAACCCTACATGATGATGCCTCCTCAACCACAAACTCAACCTACTCAGATGTGGGCCCCTAACGCTCAACCTCCTCCTCAATCCGCCCCTCCTCAACAACTACCTCAACCTGCCACCGCCGACGAGGTCCGTACTCTCTGGATCGGTGATTTACAATACTGGATGGACGAGAATTATCTTTATCAATGTTTCTCTCACACCGGCGAGGTTGGAAATGTTAAAGTTATTCGCAACAAGCAGACTAATCAATCTGAAGGTTATGGGTTTCTTGAGTTTACTAGTCGTGCTGGTGCGGAGAGAATTCTTCAACAATATAATGGCAACATTATGCCAAATGGTGGCCAGAATTTCAGATTGAACTGGGCAACTTTTAGTTCTGGGGAGAAGCGTCATGATGATTCTCCGGATTTCACCATATTTGTCGGAGATTTGGCTGCTGATGTTACTGATTATCATCTGACTGAAGTATTTAGAACTCGGTATAACTCAGTTAAGGGGGCTAAAGTTGTGATTGATAGGACTACTGGAAGGACAAAGGGTTATGGTTTTGTTAGGTTTGCAGATGAGGGTGAACAAATGAGGGCTATGAGTGAAATGCAAGGGGTTCTTTGTTCCACAAGACCCATGCGTATTGGACCAGCCTCTAACAAAAACCTTAACACACAGGCGACAAAAGCTTCATATCAGAATCCTCAAGGGGGGGCACAGAACGAGAATGATCCAAATAATACAACCATTTTTGTTGGCAACTTGGATCCTAATGTCACGGATGATCATTTGAAACAAGTTTTTGGGCAGTATGGAGAACTGGTTCATGTTAAGATTCCATCAGGCAAGAGATGCGGGTTTGTCCAATATGCAGAAAGGAGCTCTGCAGAGGAGGCACTGCGTGTTTTAAATGGTACACTTCTAGGTGGACAAAATGTTCGGCTTTCATGGGGCCGAAGCCCAGCAAACAAACAGACTCAACAGGATCCAAACCAGTGGAATGGTAGCAGTGGATACTATGGATATCCTCAGGGTTATGAAAATTATGCTTATGCCCCTGCAGCTGCACAGGACCCCAATATGTATGGCAATTATCCAGCAGGGTATGCGAATTACCAACCTCCTCAGCAACAACAGCAAATAGGATACAGCTGA 1215 0.4502 MMQPGGPGMAPHTIPQQYQQQQQQQPYMMMPPQPQTQPTQMWAPNAQPPPQSAPPQQLPQPATADEVRTLWIGDLQYWMDENYLYQCFSHTGEVGNVKVIRNKQTNQSEGYGFLEFTSRAGAERILQQYNGNIMPNGGQNFRLNWATFSSGEKRHDDSPDFTIFVGDLAADVTDYHLTEVFRTRYNSVKGAKVVIDRTTGRTKGYGFVRFADEGEQMRAMSEMQGVLCSTRPMRIGPASNKNLNTQATKASYQNPQGGAQNENDPNNTTIFVGNLDPNVTDDHLKQVFGQYGELVHVKIPSGKRCGFVQYAERSSAEEALRVLNGTLLGGQNVRLSWGRSPANKQTQQDPNQWNGSSGYYGYPQGYENYAYAPAAAQDPNMYGNYPAGYANYQPPQQQQQIGYS* 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g3170 404 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 161 240 IPR000504 GO:0003723
Tpr2g3170 404 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 17 401 - -
Tpr2g3170 404 MobiDBLite consensus disorder prediction 13 42 - -
Tpr2g3170 404 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 268 340 IPR000504 GO:0003723
Tpr2g3170 404 SMART rrm1_1 269 336 IPR000504 GO:0003723
Tpr2g3170 404 SMART rrm1_1 162 236 IPR000504 GO:0003723
Tpr2g3170 404 SMART rrm1_1 69 144 IPR000504 GO:0003723
Tpr2g3170 404 CDD RRM2_SECp43_like 160 239 - -
Tpr2g3170 404 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 163 226 IPR000504 GO:0003723
Tpr2g3170 404 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 270 333 IPR000504 GO:0003723
Tpr2g3170 404 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 70 134 IPR000504 GO:0003723
Tpr2g3170 404 SUPERFAMILY RNA-binding domain, RBD 67 242 IPR035979 GO:0003676
Tpr2g3170 404 CDD RRM3_NGR1_NAM8_like 267 338 - -
Tpr2g3170 404 Gene3D - 152 247 IPR012677 -
Tpr2g3170 404 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 68 148 IPR000504 GO:0003723
Tpr2g3170 404 SUPERFAMILY RNA-binding domain, RBD 253 365 IPR035979 GO:0003676
Tpr2g3170 404 CDD RRM1_SECp43_like 69 149 - -
Tpr2g3170 404 PANTHER POLYADENYLATE-BINDING PROTEIN RBP45B 17 401 - -
Tpr2g3170 404 Gene3D - 248 349 IPR012677 -
Tpr2g3170 404 MobiDBLite consensus disorder prediction 1 63 - -
Tpr2g3170 404 Gene3D - 10 151 IPR012677 -
Tpr2g3170 404 MobiDBLite consensus disorder prediction 43 57 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g3170 Tpr-Chr2 35598651 35602374 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g3170 67 347 Eukaryotic Initiation Factors Gene Family AT2G23350 27.682 4.32e-28 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g3170 - - gmx:100796848 591.267