Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g3166 ATGGCCATTTCAACTTCACATAATTATCTTTCACTTTCATGCTTCTTACTACCAATTGTTTTAAGCTTAGTTAATGTCTATGCAAAAGAGACACCGGTCCTCAACAAGATAGATTCTTGTTGGCGCGCGAAAACAAATTGGGCGTCAAACCGAAAAGCCTTAGCTGATTGTGCTACTGGTTTTGGCAAAGATTCAATTGGAGGTAAAAATGGTGCAATATATATAGTTACAGATCCTTCTGATGACCCTGAAAATCCAAAACAAGGTACACTTCGTTATGGCGCAATCCAAAAGGAGCCGCTTTGGATAATTTTCAAAAGGGATATGGTTATTGCATTAAAGAATGAACTTATTATGAATAGTTACAAGACTATTGATGGTAGAGGAGTTAAAGTTGAGATTGGAAATGGACCTTGTATTACAATACAAGGTGTTAGTCATGTTATTATACATGGTATTAAGATTCAGGATTGTAAACCAAGTAAGCCTGGTCTTGTTAGAAGTACTCCTGATCATGTTGGTCAACGACAAGGCGCGGATGGTGATGCTATTAATATATTTGGTTCGTCGAATATTTGGATTGATCATTGTTTTTTGGCTCGTTGCAGTGATGGACTAATTGATATTATTCATGCCTCAACTGCTATTACCATTTCTAACAATTATTTTACTCAGCATGACAAAGTTATGTTGCTAGGACACAATGATGGTTACAGAGCAGATAAAATTATGAAAGTAACAATAGTCTTCAATCGGTTTGCTAGTGGACTAACAGAAAGGATTCCACGGGTAAGAGTTGGTTATGCACACGTGGCCAACAACAAATATGATGGGTGGAAAATGTATGCTATAGGAGGAAGTTCTAACCCAACTATTTTAAGTGAAGGGAATTTTTTTATAGCACCAAATGACAAAGATGCAAAACAGATTACAAAGAGGTTAGCAAATGGAAATTCGAAGAGTTGGAATTGGAAGTCTTCTAAGGATGCATTCTCAAATGGTGCTTATTTTGTATCATCTGGTGATGGAAGTAGTGCACCAAATTATACACCTGCTCAATCTTTTGAAGCTGTTCCAGCTAATATGGTGCCTGCTATAACTCTCAATGCAGGTCCATTGAGTTGTTTTGTTGGGAAAGCATGTTAA 1146 0.3691 MAISTSHNYLSLSCFLLPIVLSLVNVYAKETPVLNKIDSCWRAKTNWASNRKALADCATGFGKDSIGGKNGAIYIVTDPSDDPENPKQGTLRYGAIQKEPLWIIFKRDMVIALKNELIMNSYKTIDGRGVKVEIGNGPCITIQGVSHVIIHGIKIQDCKPSKPGLVRSTPDHVGQRQGADGDAINIFGSSNIWIDHCFLARCSDGLIDIIHASTAITISNNYFTQHDKVMLLGHNDGYRADKIMKVTIVFNRFASGLTERIPRVRVGYAHVANNKYDGWKMYAIGGSSNPTILSEGNFFIAPNDKDAKQITKRLANGNSKSWNWKSSKDAFSNGAYFVSSGDGSSAPNYTPAQSFEAVPANMVPAITLNAGPLSCFVGKAC* 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g3166 381 SMART amb_all 108 305 IPR002022 -
Tpr2g3166 381 PANTHER PECTATE LYASE 8 380 - -
Tpr2g3166 381 Pfam Pectate lyase 116 299 IPR002022 -
Tpr2g3166 381 Gene3D - 34 374 IPR012334 -
Tpr2g3166 381 PRINTS Pollen allergen Amb family signature 57 74 IPR018082 -
Tpr2g3166 381 PRINTS Pollen allergen Amb family signature 80 105 IPR018082 -
Tpr2g3166 381 PRINTS Pollen allergen Amb family signature 116 132 IPR018082 -
Tpr2g3166 381 PRINTS Pollen allergen Amb family signature 180 201 IPR018082 -
Tpr2g3166 381 PRINTS Pollen allergen Amb family signature 260 279 IPR018082 -
Tpr2g3166 381 PRINTS Pollen allergen Amb family signature 282 301 IPR018082 -
Tpr2g3166 381 PRINTS Pollen allergen Amb family signature 322 346 IPR018082 -
Tpr2g3166 381 PRINTS Pollen allergen Amb family signature 352 375 IPR018082 -
Tpr2g3166 381 PANTHER PECTATE LYASE 18-RELATED 8 380 IPR045032 GO:0030570
Tpr2g3166 381 SUPERFAMILY Pectin lyase-like 55 380 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g3166 Tpr-Chr2 35571070 35572673 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g3166 25 381 Polysaccharide Lyase AT1G11920 66.480 0.0 511
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g3166 K01728 - gmx:100799106 595.504