Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g3137 ATGGCCATTTCAACTTCACATTATCTTTCACTTTCATGTTTCTTACTACCAATTGTTTTAAGCTTAGTTAATGTCTATGCAAAAGAGACACCGGTCCTCAACAAGATAGATTCTTGTTGGCGCGCGAAAACAAATTGGGCGTCAAACCGAAAAGCCTTAGCTGATTGTGCTATTGGTTTTGGCAAAGATTCAATTGGAGGTAAAAATGGTGCAATATATATAGTTACAGATCCTTCCGATGACCCTGAAAATCCGAAACAAGGTACACTTCGTTATGGCGCAATCCAAAAGGAGCCGCTTTGGATAATTTTCAAAAGGGATATGGTTATTGCATTAAAGAATGAACTTATTATGAATAGTTACAAGACTATTGATGGTAGAGGAGTTAAAGTTGAGATTGGAAATGGACCTTGTATTACAATACAAGGTGTTAGTCATGTTATTATACATGGTATTAAGATTCAGGATTGTAAACCAAGTAAGCCTGGTCTTGTTAGAAGTACTCCTGATCATGTTGGTCAACGACAAGGCGCGGATGGTGATGCTATTAATATATTTGGTTCGTCGAATATTTGGATTGATCATTGTTTTTTGGCTCGTTGCAGTGATGGACTAATTGATATTATTCATGCCTCAACTGCTGTTACCATTTCTAACAATTATTTTACTCAGCATGACAAAGTTATGTTGCTAGGACACAATGATGGTTACACAGCAGATAAAGTTATGAAAGTAACAATAGTCTTCAATCGGTTTGCTAGTGGACTAACCGAAAGGATTCCAAGGGTAAGAGTTGGTTATGCACACGTGGCCAACAACAAATATGATGGGTGGAAAATGTATGCTATAGGAGGAAGTTCTAACCCAACTATTTTAAGTGAAGGGAATTTTTTTATAGCACCAAATGACAAAGATGCAAAACAGATTACAAAGAGGTTAGCAAATGGAAATTCGAAGAGTTGGAATTGGAAGTCTTCTAAGGATGCATTCTCAAATGGTGCTTATTTTGTATCATCTGGTGATGGAAGTAGTGCACCAAATTATACACCTGCACAATCTTTTGAAGCTGTTCCAGCTAATATGGTGCCTGCTATAACTCTCAATGCAGGTCCATTGAGTTGTTTTGTTGGGAAAGCATGTTAA 1143 0.3718 MAISTSHYLSLSCFLLPIVLSLVNVYAKETPVLNKIDSCWRAKTNWASNRKALADCAIGFGKDSIGGKNGAIYIVTDPSDDPENPKQGTLRYGAIQKEPLWIIFKRDMVIALKNELIMNSYKTIDGRGVKVEIGNGPCITIQGVSHVIIHGIKIQDCKPSKPGLVRSTPDHVGQRQGADGDAINIFGSSNIWIDHCFLARCSDGLIDIIHASTAVTISNNYFTQHDKVMLLGHNDGYTADKVMKVTIVFNRFASGLTERIPRVRVGYAHVANNKYDGWKMYAIGGSSNPTILSEGNFFIAPNDKDAKQITKRLANGNSKSWNWKSSKDAFSNGAYFVSSGDGSSAPNYTPAQSFEAVPANMVPAITLNAGPLSCFVGKAC* 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g3137 380 SUPERFAMILY Pectin lyase-like 54 379 IPR011050 -
Tpr2g3137 380 PANTHER PECTATE LYASE 7 379 - -
Tpr2g3137 380 PANTHER PECTATE LYASE 18-RELATED 7 379 IPR045032 GO:0030570
Tpr2g3137 380 SMART amb_all 107 304 IPR002022 -
Tpr2g3137 380 PRINTS Pollen allergen Amb family signature 56 73 IPR018082 -
Tpr2g3137 380 PRINTS Pollen allergen Amb family signature 79 104 IPR018082 -
Tpr2g3137 380 PRINTS Pollen allergen Amb family signature 115 131 IPR018082 -
Tpr2g3137 380 PRINTS Pollen allergen Amb family signature 179 200 IPR018082 -
Tpr2g3137 380 PRINTS Pollen allergen Amb family signature 259 278 IPR018082 -
Tpr2g3137 380 PRINTS Pollen allergen Amb family signature 281 300 IPR018082 -
Tpr2g3137 380 PRINTS Pollen allergen Amb family signature 321 345 IPR018082 -
Tpr2g3137 380 PRINTS Pollen allergen Amb family signature 351 374 IPR018082 -
Tpr2g3137 380 Gene3D - 33 373 IPR012334 -
Tpr2g3137 380 Pfam Pectate lyase 115 298 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g3137 Tpr-Chr2 35364377 35365974 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g3137 24 380 Polysaccharide Lyase AT1G11920 66.480 0.0 513
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g3137 K01728 - gmx:100799106 596.66