Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g3134 ATGGCCATTTCAACTTCACTCCTCTCACTTTCATGCTTCTTAATTTTAAGCTTAGTTAATGCCTATGCAAAAGAGAACTACTATAACACTAAGTCACCAATCCTCAACAAGATAGATTCTTGTTGGCGCGCGAAAACGAATTGGGCGTCTAACCGAAAAGCCTTAGCTAATTGTGCTATTGGTTTTGGCAAAGATGCAATTGGAGGCAAATATGGTGCAATATATATAGTTACAGATTCTTCTGATGACCCTGAAAATCCAAAACAAGGTACACTTCGTTATGGCGCAATCCAAACGAAGCCGCTTTGGATAATTTTCAAAAGGGATATGGTTATTGCATTAAAGAATGAACTTATTATGAATAGTTACAAGACTATTGATGGTAGAGGAGTTAAAGTTGAGATTGGAAATGGACCTTGTATTACAATACAAGGTGTTAGTCATGTTATTATACATGGTATTAGGATTCATGATTGTAAACCAAGTAAGGCTGGACTTGTTAGAAGTACTCCTGATCATGTTGGTCATCGACAAGGCTCGGATGGTGATGCTATTAGTATATTTGCTTCGTCGAATATTTGGATTGATCATTGTTATTTGGCTAGTTGTAGTGATGGACTAATTGATATTATTCATGCCTCAACCGCTATTACCATTTCTAACAATTACTTTACTCAGCATGACAAAGTTATGTTGCTAGGACACAATGATGGTTACACAGCAGATAAAGTAATGAAAGTAACAATAGTCTTCAATAGGTTTGCTAGTGGACTAACTGAAAGGATGCCAAGGGTAAGATTTGGTTATGCACACGTGGCCAACAACAAATATGATGAGTGGAAAATGTATGCTATAGGAGGAAGTTCTAACCCAACTATTTTAAGTGAGGGGAATTTTTTTATAGCACCAAATGACCAAAATGCAAAACAGATTACAAAGAGGGAAGCAAAGGCAAATTGGAAGAGTTGGAAATGGAGGTCTTCTAAGGATGCATTCTCAAATGGTGCTTATTTTGTACCATCTGGTTATGGAAGTTGTGCACCAAATTATACACCTTCTCAATCTTTTGTAGCTGTTCCAGCTTATATGGTGCCTGCTATAACTCTCAATGCAGGTCCATTGAGATGTTTTGTTGGGAGAGCATGTTAA 1149 0.3716 MAISTSLLSLSCFLILSLVNAYAKENYYNTKSPILNKIDSCWRAKTNWASNRKALANCAIGFGKDAIGGKYGAIYIVTDSSDDPENPKQGTLRYGAIQTKPLWIIFKRDMVIALKNELIMNSYKTIDGRGVKVEIGNGPCITIQGVSHVIIHGIRIHDCKPSKAGLVRSTPDHVGHRQGSDGDAISIFASSNIWIDHCYLASCSDGLIDIIHASTAITISNNYFTQHDKVMLLGHNDGYTADKVMKVTIVFNRFASGLTERMPRVRFGYAHVANNKYDEWKMYAIGGSSNPTILSEGNFFIAPNDQNAKQITKREAKANWKSWKWRSSKDAFSNGAYFVPSGYGSCAPNYTPSQSFVAVPAYMVPAITLNAGPLRCFVGRAC* 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g3134 382 Gene3D - 35 375 IPR012334 -
Tpr2g3134 382 Pfam Pectate lyase 117 300 IPR002022 -
Tpr2g3134 382 PANTHER PECTATE LYASE 18-RELATED 10 381 IPR045032 GO:0030570
Tpr2g3134 382 PANTHER PECTATE LYASE 10 381 - -
Tpr2g3134 382 PRINTS Pollen allergen Amb family signature 58 75 IPR018082 -
Tpr2g3134 382 PRINTS Pollen allergen Amb family signature 81 106 IPR018082 -
Tpr2g3134 382 PRINTS Pollen allergen Amb family signature 117 133 IPR018082 -
Tpr2g3134 382 PRINTS Pollen allergen Amb family signature 181 202 IPR018082 -
Tpr2g3134 382 PRINTS Pollen allergen Amb family signature 261 280 IPR018082 -
Tpr2g3134 382 PRINTS Pollen allergen Amb family signature 283 302 IPR018082 -
Tpr2g3134 382 PRINTS Pollen allergen Amb family signature 323 347 IPR018082 -
Tpr2g3134 382 PRINTS Pollen allergen Amb family signature 353 376 IPR018082 -
Tpr2g3134 382 SMART amb_all 109 306 IPR002022 -
Tpr2g3134 382 SUPERFAMILY Pectin lyase-like 56 381 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g3134 Tpr-Chr2 35353175 35354794 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g3134 6 382 Polysaccharide Lyase AT1G11920 65.608 0.0 532
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g3134 K01728 - gmx:100807483 635.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g3134 2 35353175 35354794 Tpr2g3134 2 35353175 35354794 ECH