Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g3123 ATGAGTCAACTCGGTCTCATATTGCAGGAATCGCTACGTCCTCAAAGAGAATCAAGAACAATTCTCGGTTTATTAACGGAACAAATGGACGGCGTAGATTTAGGAACATCGAGAAGGCGTAGTCTTAAAGAACGGTTCAGATTCATCGGAATGGGTTGTTGTGGAGCCACCTGGGTTTTCCGTCCAATTATCAGGCACGAGAGAGAAAGAGAAGCTACGGAACAGGTTCAAGATCTGAACCCGGTTGAACCGGAATGTGTGAACCCGGGATCGTCTGGTTCTGGAATGAATCTAGCGACGGCGTTGGCGGCGGAGCGTCAGATGAGGGGATCGGAGGAGGCGAGTGGCGGAGAAGGAGGGACGCCGTGGAGAGTTTCGTTGATGAAACTGTTGGAAGAAAAGGAAGTTGAAAATGAGAGTACTACAGTGGAGGGGAATGATACGGTGTGTTGCGTGTGCATGGGAAGGAAGAAAGGTGCAGCGTTCATACCGTGTGGACACACTTTTTGTAGAGTGTGTTCAAGGGAATTGTGGTTGAATCGAGGAAATTGTCCCCTTTGTAATCGTTCTATTCTCGAGATTCTCGACATTTTCTGA 597 0.4824 MSQLGLILQESLRPQRESRTILGLLTEQMDGVDLGTSRRRSLKERFRFIGMGCCGATWVFRPIIRHEREREATEQVQDLNPVEPECVNPGSSGSGMNLATALAAERQMRGSEEASGGEGGTPWRVSLMKLLEEKEVENESTTVEGNDTVCCVCMGRKKGAAFIPCGHTFCRVCSRELWLNRGNCPLCNRSILEILDIF* 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g3123 198 CDD RING-HC 150 187 - -
Tpr2g3123 198 SUPERFAMILY RING/U-box 149 195 - -
Tpr2g3123 198 Pfam Zinc finger, C3HC4 type (RING finger) 147 192 - -
Tpr2g3123 198 ProSiteProfiles Zinc finger RING-type profile. 150 188 IPR001841 -
Tpr2g3123 198 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 18 198 - -
Tpr2g3123 198 SMART ring_2 150 187 IPR001841 -
Tpr2g3123 198 PANTHER OS01G0917900 PROTEIN 18 198 - -
Tpr2g3123 198 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 127 198 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g3123 Tpr-Chr2 35270430 35271382 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g3123 21 198 C3H Transcription Factor Family AT4G22250 54.359 7.56e-59 182
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g3123 - - gmx:100792613 270.781
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g3123 2 35270430 35271382 Tpr7g2615 7 33368515 33369742 PCT