Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g3102 ATGACTCCGATCCAAACCCCTATCCTTCAACAACAACTACAACAACAACTACAACAACAATACCGTTCATCGTCGAAACGTAAATTAGACGATGACGACGAAAACAACATGTTAGATGATGACTTAGTCTATGTTAGAATGAGGAAACAAGAAACGACAAAAACAGCAGTTAATTCATGGAGCCGTGGCGGTGGTGGTGTTGGTAGTAATGGTGGTGGTTTATTGAAGAAAAAATCAGAAATTCAATTTTTTATTAGAATGATGCCAAAAGGAAACAGCGTTGTTATACACGCTTATCCAGAAGATACTGTGAAATCAATTCTTGAACGGTTAGTAGAATTGAATAGTATACCTATTTTTGAACAGAGGTTGATTTTCGGAGGTAAACAGCTTCAGTGGGAACAAACTGTTGCTCAGTGTGGTATACAAAAAGACTCTCATGTTGAACATGTCGGTCGAATGCGGAGTACAGAACATCCTCAAGCTTGGCAAGTTGTTAATGATATGGTTACTGTTGTTTATGATCTTTGTCGTCAAGTAGAGGTTGATGAAGCTGCTAAAACTGTTAAGAGTCTTCTCACTAATTACATAAGCTTGGCTCTAACTCCTAAACCCAAACTTGATGCTGATTCTGCTACCAGCTATTTCGGGATTTTCATGAATTCCTCTGCCATTTCAGTTCTTGTTACTCTCTATATTTCACCTTTCAAGGGTAACAAGGACACTGCTGATTGTTGTATTAGGCATTTTTTGAATTGTTGTAGGACTTCATTGTCTAAGATATTTCATACTCAGGTTGCGCGTGTAGCGTTGGAGTTTTGTAAATTGCTTAGGAGAGGAGCAGGGACTCATGATCCTTTGTATCTCTTTTGTCGTAGTAGTTTGGGGGATTTTCTGGAGGCTGCTGAAGTTTCACTTGCTTCTTCTGAGGATCAGAATTTTAAAGGTTTGGTATTGGTTCAAGATTTGTTTCCGTTTGTTCGCGAACTTGCTGATAGTTTGTTGATGAATTTGGATTCAAGCAATGATTCCCCTTCACTTGCTTGTCCTTTGTTGACCAATATTGGGGATTTTACTGCATTTTTAGTCCCTGTGAGGACTGGAATTGAGCAACATCAGGCTCTCCGGGGTCATGTCCCTTACCACAAGCTCGACAGGAACGGCTTGGTTATGGAAGAGATTGAATACCTTCATCTGCTGTACAATCAGTTGTTGTGCAAAATTGATACATGCCTTCACAAAATGGAGAAGAGATTCGTTGACAAGGAAATGGTGCATGAGGAAAATTATTTTTATCCTGCTTGTTCTCTCTATCTTTCCCTTTTGAAGGAGTTGCATAAGATTTCTAAGCTTTATGACGGTGCTCCAGAAAAGCTCCGGAGTGTTTTGATGCGGCAAAAGACTGTGATGTGTCTGATGGTCGTTAAATATGCAAAGAGGGCCGACGAGCATCAGTGGATTCTCGAGCACAAGAATGTCACTACTTTTGAGGCTAGGAGGCATCTGGCCATGATGATATTCCCGGAGGTAAAAGAAGACTATGAGGAGCTACATGAGATGCTCATTGACAGGTCTCAGTTGTTAACTGAATCTTTCGAATACATTGCACGGGCTGATCCCGAATCACTTCGTGCTGGACTGTTTATGGAATTCAAAAACGAGGAAGCCACTGGCCCTGGTGTGCTGAGGGAATGGTTCCTTTTGGTTTGTCAAGCAATATTCAATCAGGCAAACGCCCTTTTTGTTGCCTGCCCAAACGAGCGAACAAGATTTCTCCCCAATTCTGCTTCCAAGGTACATCCTCTGCATCTTGAGTACTTTCGCTTCTGTGGTCGAGTTATTGCATTAGCTTTGATGCATAAGGTGCAAGTAGGTATTGTTTTTGATCGCACATTTTTCTTGCAATTGGCTGGAAATCCTATTACTTTAGAAGACATAAGGGATGCAGATCCTCACCTGTATAAAAGCTGCAAGCAGATATTGGACATGGATTCTGGTTTCATTGATTCAGACGCATTAGGACTGACGTTTGTTAGAGAAGTGGAGGAATTAGGACACAGGAAAGCAGTTGAGCTCTGTAGTGGTGGAAAAAACATTGTTGTTACTAGTAAGAACAGGGCAAAGTATGTTGATCTTCTTATAAAGGATCGTTTTGTAAAATCCATATCCGAGCAGGTGTCACACTTTTCCCAAGGTTTTGCTGATATTCTTTCATGTTCAAAGCTCCAGCAGTTCTTCTTTCGAGGTTTAGAGCCTGAAGATCTTGATTATATGCTGCGTGGGAGTGAAGATGCCATTTCTGTCGAAGATTGGAAAGCACACACCGAATATAATGGCTACAAAGAGACAGATATTCAGATATCTTGGTTTTGGGAGATTGTGGGGAGAATGACAGCTGAAGAAAAGAAGGTTCTTCTTTTCTTTTGGACGTCTGTGAAATATTTACCAGTTGAAGGCTTCTGTGGTTTGGGTTCCCGTCTCCACATTTACAAGTCCCATGAACCTTGCAATCGTCTTCCTTCATCTCATACATGCTTTCACCGGCTGTGTTTCCCAGTTTATTCGTCTATGCCTGTCATGGAAGCTCGTCTTAAAGTCATTACTCAAGAACATATTGGCAGTAGTTTTGGTACTTGGTGA 2640 0.4106 MTPIQTPILQQQLQQQLQQQYRSSSKRKLDDDDENNMLDDDLVYVRMRKQETTKTAVNSWSRGGGGVGSNGGGLLKKKSEIQFFIRMMPKGNSVVIHAYPEDTVKSILERLVELNSIPIFEQRLIFGGKQLQWEQTVAQCGIQKDSHVEHVGRMRSTEHPQAWQVVNDMVTVVYDLCRQVEVDEAAKTVKSLLTNYISLALTPKPKLDADSATSYFGIFMNSSAISVLVTLYISPFKGNKDTADCCIRHFLNCCRTSLSKIFHTQVARVALEFCKLLRRGAGTHDPLYLFCRSSLGDFLEAAEVSLASSEDQNFKGLVLVQDLFPFVRELADSLLMNLDSSNDSPSLACPLLTNIGDFTAFLVPVRTGIEQHQALRGHVPYHKLDRNGLVMEEIEYLHLLYNQLLCKIDTCLHKMEKRFVDKEMVHEENYFYPACSLYLSLLKELHKISKLYDGAPEKLRSVLMRQKTVMCLMVVKYAKRADEHQWILEHKNVTTFEARRHLAMMIFPEVKEDYEELHEMLIDRSQLLTESFEYIARADPESLRAGLFMEFKNEEATGPGVLREWFLLVCQAIFNQANALFVACPNERTRFLPNSASKVHPLHLEYFRFCGRVIALALMHKVQVGIVFDRTFFLQLAGNPITLEDIRDADPHLYKSCKQILDMDSGFIDSDALGLTFVREVEELGHRKAVELCSGGKNIVVTSKNRAKYVDLLIKDRFVKSISEQVSHFSQGFADILSCSKLQQFFFRGLEPEDLDYMLRGSEDAISVEDWKAHTEYNGYKETDIQISWFWEIVGRMTAEEKKVLLFFWTSVKYLPVEGFCGLGSRLHIYKSHEPCNRLPSSHTCFHRLCFPVYSSMPVMEARLKVITQEHIGSSFGTW* 880
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g3102 879 PANTHER HECT DOMAIN UBIQUITIN-PROTEIN LIGASE 76 877 - -
Tpr2g3102 879 CDD HECTc 518 877 IPR000569 GO:0004842
Tpr2g3102 879 Pfam HECT-domain (ubiquitin-transferase) 568 871 IPR000569 GO:0004842
Tpr2g3102 879 Gene3D Hect, E3 ligase catalytic domains 521 746 - -
Tpr2g3102 879 ProSiteProfiles Ubiquitin domain profile. 81 157 IPR000626 GO:0005515
Tpr2g3102 879 SMART hect_3 537 877 IPR000569 GO:0004842
Tpr2g3102 879 Gene3D Hect, E3 ligase catalytic domain 762 878 - -
Tpr2g3102 879 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UPL5 76 877 - -
Tpr2g3102 879 PRINTS Ubiquitin signature 92 112 IPR019956 -
Tpr2g3102 879 PRINTS Ubiquitin signature 113 133 IPR019956 -
Tpr2g3102 879 PRINTS Ubiquitin signature 134 155 IPR019956 -
Tpr2g3102 879 Gene3D - 75 170 - -
Tpr2g3102 879 Gene3D Hect, E3 ligase catalytic domain 639 721 - -
Tpr2g3102 879 ProSiteProfiles HECT domain profile. 539 879 IPR000569 GO:0004842
Tpr2g3102 879 SMART ubq_7 81 153 IPR000626 GO:0005515
Tpr2g3102 879 SUPERFAMILY Ubiquitin-like 81 169 IPR029071 -
Tpr2g3102 879 Pfam Ubiquitin family 84 155 IPR000626 GO:0005515
Tpr2g3102 879 SUPERFAMILY Hect, E3 ligase catalytic domain 514 865 IPR035983 GO:0004842
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g3102 Tpr-Chr2 35139317 35146080 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g3102 81 155 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 33.333 2.08e-07 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g3102 - - gmx:100789233 1171.38
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g3102 2 35139317 35146080 Tpr7g2580 7 33059832 33065752 PCT