Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tpr2g3074 | ATGGCTGAATCAGATGATGAGTCAGGTGGCCAAGCTTCAGGGAGCAGAGAACTACTGCAAGAAAGGCTCCTTCCCATAGCAAACGTGGGAAGGATCATGAAGAAAGCGTTACCGGCGAAAGCAAAGATATCAAAGGAATCAAAAGAAACTATGCAAGAGTGTGTATCAGAGTTCATAAGTTTCATAACAGGTGAAGCATCTGAAAAGTGTCAGAAAGAGAAGAGGAAAACAATAAACGGTGATGATCTTTTGTGGGCTATGACTACACTTGGTTTTGAAGAATATGCTGAGCCTCTTAAGGGTTACCTTCATAGGTATAGGGAGATTGAAGGTGACAAGAATTTTTCTATGAGTATGATTGGTAAGGAGCAACAGGGTAGTAGTAGTGCTGATAATCGATTCTTCCAAGGCTGA | 414 | 0.4155 | MAESDDESGGQASGSRELLQERLLPIANVGRIMKKALPAKAKISKESKETMQECVSEFISFITGEASEKCQKEKRKTINGDDLLWAMTTLGFEEYAEPLKGYLHRYREIEGDKNFSMSMIGKEQQGSSSADNRFFQG* | 138 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tpr2g3074 | 137 | Pfam | Histone-like transcription factor (CBF/NF-Y) and archaeal histone | 23 | 87 | IPR003958 | - | |
Tpr2g3074 | 137 | PRINTS | CCAAT-binding transcription factor subunit A signature | 51 | 69 | - | - | |
Tpr2g3074 | 137 | PRINTS | CCAAT-binding transcription factor subunit A signature | 70 | 88 | - | - | |
Tpr2g3074 | 137 | PRINTS | CCAAT-binding transcription factor subunit A signature | 89 | 107 | - | - | |
Tpr2g3074 | 137 | Gene3D | Histone, subunit A | 12 | 134 | IPR009072 | GO:0046982 | |
Tpr2g3074 | 137 | ProSitePatterns | NF-YB/HAP3 subunit signature. | 54 | 70 | IPR003956 | GO:0005634|GO:0006355|GO:0043565 | |
Tpr2g3074 | 137 | SUPERFAMILY | Histone-fold | 20 | 117 | IPR009072 | GO:0046982 | |
Tpr2g3074 | 137 | PANTHER | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-3 | 1 | 129 | - | - | |
Tpr2g3074 | 137 | PANTHER | CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED | 1 | 129 | IPR027113 | GO:0001228|GO:0006355|GO:0016602 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Tpr2g3074 | Tpr-Chr2 | 34909094 | 34909880 | Proximal |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Tpr2g3074 | 1 | 114 | CCAAT-HAP3 Transcription Factor Family | AT4G14540 | 74.576 | 7.65e-61 | 182 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | NF-YB | Tpr2g3074 | CBFD_NFYB_HMF | 2.4e-27 | CL0012 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tpr2g3074 | K08065 | - | gmx:100778034 | 188.734 |