Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g3072 ATGGAAACTGGAGGAGGTTTTCAAGGTTACCGCAAGCTCCCCAACGCTACCCCTGCTGGGGCACTGAAGTTATCAGTCTCTGAAATGAACACGAGGCAGCAAGTGGGAGAACAGAACAACAACCACTCATCAGCAGGAACAGAACAGGACAATGAATGCACTGTAAGGGAACAAGACCGTTTCATGCCAATTGCAAATGTGATAAGGATCATGCGAAAGATTCTACCACCACATGCAAAAATTTCTGACGATGCAAAAGAAACAATCCAAGAGTGTGTATCTGAGTACATCAGCTTCATAACTGGAGAAGCAAATGAACGTTGTCAAAGAGAGCAAAGGAAGACAATAACTGCTGAAGATGTTCTTTGGGCTATGAGTAAGCTTGGTTTTGATGATTACATTGAACCTCTTACAATGTATCTTCATCGTTATCGCGAGCTTGAAGGTGATCGTACTTCGATGAGAGTTGAACCGATGGGAAAGAGGGGTATGGATCAATATGGAAATGCTTTAGGGGGGTTTGTTCCACAGTTTCATATTGGTCATCCAAATGGAGGGTATTATGGCAATGCAGCAACTTATATGATGAGTGGTAATAACAATAATGGTGCTGGAGGTTCTTCTCATGCTGAAGCCAATGGTCATCATCATCATCATCAATATAAGTAA 669 0.423 METGGGFQGYRKLPNATPAGALKLSVSEMNTRQQVGEQNNNHSSAGTEQDNECTVREQDRFMPIANVIRIMRKILPPHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTITAEDVLWAMSKLGFDDYIEPLTMYLHRYRELEGDRTSMRVEPMGKRGMDQYGNALGGFVPQFHIGHPNGGYYGNAATYMMSGNNNNGAGGSSHAEANGHHHHHQYK* 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g3072 222 MobiDBLite consensus disorder prediction 31 54 - -
Tpr2g3072 222 Gene3D Histone, subunit A 48 169 IPR009072 GO:0046982
Tpr2g3072 222 ProSitePatterns NF-YB/HAP3 subunit signature. 92 108 IPR003956 GO:0005634|GO:0006355|GO:0043565
Tpr2g3072 222 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 4 162 - -
Tpr2g3072 222 MobiDBLite consensus disorder prediction 31 51 - -
Tpr2g3072 222 SUPERFAMILY Histone-fold 58 155 IPR009072 GO:0046982
Tpr2g3072 222 PRINTS CCAAT-binding transcription factor subunit A signature 89 107 - -
Tpr2g3072 222 PRINTS CCAAT-binding transcription factor subunit A signature 108 126 - -
Tpr2g3072 222 PRINTS CCAAT-binding transcription factor subunit A signature 127 145 - -
Tpr2g3072 222 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 61 125 IPR003958 -
Tpr2g3072 222 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 4 162 IPR027113 GO:0001228|GO:0006355|GO:0016602
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g3072 Tpr-Chr2 34898055 34901329 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g3072 5 202 CCAAT-HAP3 Transcription Factor Family AT5G47670 59.908 4.37e-75 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Tpr2g3072 CBFD_NFYB_HMF 6.4e-26 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g3072 K08065 - gmx:100800011 282.722