Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g3060 ATGGGGATGGGGGGTTTGCAACACGTTCTTGCTCAATTAACAATAAACACTAACACTATCAAGAATCTCCTTCAAATAATCATGCTCTCCGACATCGATTACCGCTGTAAAATCGCCATCTTACTCAGAACCCTACATGATGAGTTGAACAAATCATATATCCATCAATGGATGCTTCAAGTTATCGAATTACTCGCACAACTTTATATTCATCATTCTAAACCAATGACCATCTCTTTTCAAGAAGCTTATTGCGCCATTGCAGTTGAATGTACTTTGAGGTGCCTTCATACAACAACAACACGCCCTAACTACATCACAGCTGTTGAGACTATTTGGAAAGATAGGGTTCCTTACATTGAGATGTCTTGGAAAAGTGGGTTGTTTACTGATGAATTAGAGAAATGGAAAAATGAAATCTTGAATTCTCTTTTGGATGCACGGGTTATGAAAAAACTCGAAAGCTTTCCAGATAATACTAATAAGATTGCGCTTCAAAAGTTAGATTTTTTCTTGGCTAAAGCTTGGGATGATCTTGGTCCGGCTAACAATTTCGATGTCATTGTCAATGACTCAAGTGTCATAGCATCTTTAATCAAAGGCAAGTTTGTCAATACTGTTGCTGCTGAGAAAATGGACGCAATATCCTCTTGTAGCAAAATCAACTCTATGCCGGTTGACGAGGTTCCAACGACTGGGGAATCTCTTCAATGTAGTTCTGCTGAGTTGGAAAACCAGGACGTTGAGGTCATGAATCAAGAGGCACAGATGGAAAGCGATATTTCAGATACTGTTGATGATGAGAGAATGGATGCAGAAATCTCTAATAGCAAAATCAACTCTATGCCGATTGATGAGGTTCCAAAGATTGGGGAATCTCTTCAATGTAGTTCTGCTGAGCTGGAAAATCAGGATGTTGAGGACATGAATCAAGAGGCACAGATGGAAAACAATAGTCCAGATTCATATGTACCCATCTCGCAAGGTTGCCGAAGTATTAATAATAACAAGGCTAATCATAAAAAGAGAACTTCTGCCCGTCAGAGTGATGTTCGTCATCCTAGCTTGATGAAATCAAATTGTACTGCTCGTACTCATGAGTGGGATGATTCAATTGGCTCGCAGGGAGGAACAAGTGACACAAGTAAAATTAGTTTGCGTAGTCCAAAAGTGAGGAAACTTCCTCCATTCAAGGAGTATAAACCAAAGAGAAAGAAAAGAACATGGAGTGAATTGGAAGAGGATAATCTAAGGGCTGGATTTAAACAATTTGGCTATGATTGGAAAACTATATGCGATTCTTTTACATTTGATCGAAGAACCCCAGTTGATTTGAAAGACAAATGGAGAAATATGATCAAGTATGGAAAAGCACAAGAACCTGGACAAGCTCAAGAATGA 1401 0.3897 MGMGGLQHVLAQLTINTNTIKNLLQIIMLSDIDYRCKIAILLRTLHDELNKSYIHQWMLQVIELLAQLYIHHSKPMTISFQEAYCAIAVECTLRCLHTTTTRPNYITAVETIWKDRVPYIEMSWKSGLFTDELEKWKNEILNSLLDARVMKKLESFPDNTNKIALQKLDFFLAKAWDDLGPANNFDVIVNDSSVIASLIKGKFVNTVAAEKMDAISSCSKINSMPVDEVPTTGESLQCSSAELENQDVEVMNQEAQMESDISDTVDDERMDAEISNSKINSMPIDEVPKIGESLQCSSAELENQDVEDMNQEAQMENNSPDSYVPISQGCRSINNNKANHKKRTSARQSDVRHPSLMKSNCTARTHEWDDSIGSQGGTSDTSKISLRSPKVRKLPPFKEYKPKRKKRTWSELEEDNLRAGFKQFGYDWKTICDSFTFDRRTPVDLKDKWRNMIKYGKAQEPGQAQE* 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g3060 466 Coils Coil 238 258 - -
Tpr2g3060 466 Gene3D - 398 458 - -
Tpr2g3060 466 SUPERFAMILY Homeodomain-like 400 456 IPR009057 -
Tpr2g3060 466 MobiDBLite consensus disorder prediction 350 385 - -
Tpr2g3060 466 PANTHER MYB TRANSCRIPTION FACTOR 6 455 - -
Tpr2g3060 466 SMART sant 405 455 IPR001005 -
Tpr2g3060 466 Pfam Myb-like DNA-binding domain 407 452 IPR001005 -
Tpr2g3060 466 ProSiteProfiles Myb-like domain profile. 401 453 IPR001005 -
Tpr2g3060 466 MobiDBLite consensus disorder prediction 335 392 - -
Tpr2g3060 466 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 401 457 IPR017930 -
Tpr2g3060 466 CDD SANT_TRF 407 454 - -
Tpr2g3060 466 Coils Coil 296 316 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g3060 Tpr-Chr2 34817388 34820265 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g3060 377 453 Single Myb Histone (SMH) Gene Family AT1G15720 34.884 2.42e-06 47.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Tpr2g3060 Myb_DNA-binding 1.5e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g3060 - K11111 mtr:MTR_3g116690 232.646