LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tpr2g3045	ATGGCAATAGCAAGAGCAGTATCACCTACCATGAGCATGAGAATGAGCTTGAGCCATAGTCATGAAGATGGAAATAATAATACTACTACTACCAATTCTAACGACAGCAATACTAAGGCAACTACAGTAACAGCAGTAGTTGATGATGATGATGATGATCACGAGCATGACTTGGTTATGCCTGGTTTTCGTTTCCATCCAACTGAAGAAGAGCTCGTGGAGTTCTACCTTCGCCGTAAGGTGGAGGGAAAACGTTTCAACGTTGAGCTTATTACTTTTCTTGATCTTTATCGCTATGACCCTTGGGAACTTCCTGCTTTGGCAGCAATTGGAGAGAAGGAGTGGTACTTCTATGTGCCTAGAGATAGGAAGTATCGGAACGGCGATCGTCCCAACCGAGTAACTACTTCTGGTTATTGGAAGGCAACAGGAGCTGATAGGATGATTAGAACTGAAAACTTCCGTTCAATTGGATTGAAGAAAACCCTAGTTTTCTATTCTGGTAAAGCTCCTAAAGGTATAAGAACCAGCTGGATTATGAACGAGTATCGCTTGCCTCAACATGAAACCGAAAGATATCAAAAGGGTGAGATATCTCTATGCCGTGTATACAAGAGAGCTGGAGTAGAAGATCATCCTTCCCTCCCTCGTTGTCTCCCAATCACCAGACCATCATCTGCAAGAGGTTCTTCACATAATAATTCAGACAAGAAGCAGAATGAAATATTGGGAATGGGATTTGTTGTTGGACAATCATCAAAGACACTAGTAATTGATCATGATGATGATAATGATGATGATCAAATACTTAACAAAATGGATGGAGGAGGAAGCAGTAGCGCCGGTGCCACCCACGGTAATTCTTCAGATCATGATCATGTGACAACAGCTCTTGGACTTTCCAAGTACAGTCCTCCTCCTCCTCCTCATCCTCATAATTACCGTACAGAGGAGGAAGAACAATTGATGATGATGCAACATCAACAGGCACCTAGGCAATTAGTACAATATGCAGCTGCAGCTGGAAACTCTTTGTTTGTCCCAGCTGTCTGTGGTGGCGCCATTTCAACGTCGGCAGCAGGAGCGAGTTGTTCTTCTAATAACGGTAGTACTGCAAGTGCTGCAATGATGATGGATGAACTCAACAGACTTGTAAGTTATCAACAACAGCAGCAATACTGTTACAATGTTCAAAACAATATTATTAATCCTCCTAATCCAAATCCCAATAATCATCATTTCTCTACTTTGCTGATGCAACCAATGTCTCTACCAAATCAACTACCAGCTGCAACTGCAACAACTTTCTCTGACCGACTGTGGGACTGGAATCCAATCCCTGAGGATCATAATCATAATCACCCCAACAGTAGTAGTAGTAACACTACCTCCTTCAAGTAA	1401	0.4233	MAIARAVSPTMSMRMSLSHSHEDGNNNTTTTNSNDSNTKATTVTAVVDDDDDDHEHDLVMPGFRFHPTEEELVEFYLRRKVEGKRFNVELITFLDLYRYDPWELPALAAIGEKEWYFYVPRDRKYRNGDRPNRVTTSGYWKATGADRMIRTENFRSIGLKKTLVFYSGKAPKGIRTSWIMNEYRLPQHETERYQKGEISLCRVYKRAGVEDHPSLPRCLPITRPSSARGSSHNNSDKKQNEILGMGFVVGQSSKTLVIDHDDDNDDDQILNKMDGGGSSSAGATHGNSSDHDHVTTALGLSKYSPPPPPHPHNYRTEEEEQLMMMQHQQAPRQLVQYAAAAGNSLFVPAVCGGAISTSAAGASCSSNNGSTASAAMMMDELNRLVSYQQQQQYCYNVQNNIINPPNPNPNNHHFSTLLMQPMSLPNQLPAATATTFSDRLWDWNPIPEDHNHNHPNSSSSNTTSFK*	467

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Tpr2g3045	466	SUPERFAMILY	NAC domain	59	205	IPR036093	GO:0003677\|GO:0006355
Tpr2g3045	466	Pfam	No apical meristem (NAM) protein	61	185	IPR003441	GO:0003677\|GO:0006355
Tpr2g3045	466	MobiDBLite	consensus disorder prediction	224	238	-	-
Tpr2g3045	466	PANTHER	PROTEIN CUP-SHAPED COTYLEDON 2-RELATED	41	452	-	-
Tpr2g3045	466	MobiDBLite	consensus disorder prediction	215	238	-	-
Tpr2g3045	466	ProSiteProfiles	NAC domain profile.	59	206	IPR003441	GO:0003677\|GO:0006355
Tpr2g3045	466	Gene3D	NAC domain	68	209	IPR036093	GO:0003677\|GO:0006355
Tpr2g3045	466	MobiDBLite	consensus disorder prediction	1	39	-	-
Tpr2g3045	466	PANTHER	NAC DOMAIN-CONTAINING PROTEIN 72-LIKE	41	452	-	-
Tpr2g3045	466	MobiDBLite	consensus disorder prediction	11	39	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Tpr2g3045	Tpr-Chr2	34696603	34699599	Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tpr2g3045	58	235	NAC Transcription Factor Family	AT2G02450	85.955	3.34e-111	333

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	NAC	Tpr2g3045		NAM	5.4e-34	No_clan

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tpr2g3045	-		-	mtr:MTR_4g134460	564.688

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