Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g3042 ATGGAAGGAATAATAGGTGGTGGTGGTGGTGGTGGTCATCCAGTACCTCGAACAGTTGATGAGGTTTTCAGCGACTACAAGGGCAGACGCGCTGGTTTGATCAAAGCTCTCACTACTGACGTTGAAAAGTTTTACCAGCTCTGCCATCCTGACAAGGAGAACTTATGCCTATATGGATATCCAAATGAAACATGGGAAGTGAATTTACCGGTTGAGGAAGTGCCTCCTGAACTTCCCGAGCCAGCATTAGGTATAAACTTTGCTAGGGATGGGATGCAGGAGAAGGACTGGTTAGCACTGGTTGCAGTTCACAGTGACTCGTGGCTTCTTGCTGTTGCTTTTTATTTTGGTGCCCGCTTTGGATTTGGTAAGAATGAAAGGAAAAGGCTTTTTCAGATGATAAACGATCTGCCAACTATCTTTGAGCTTGCAACAGGAAATGCTAAGCAATTGAAGGACCAACCAACTGCTCACAACAATGGTAGCAATAGCAAATACAAATCAAGTGGAAAGTCTCGCCAGTCTGAGCCTCAGGCCAAGGGTGTGAAGATGTCGGCACCACCCAAAGAAGAGGATGACAGTGGGGAAGAAGAAGAAGATGATGATGATGAACAAGGTGCAACCTGTGGTGCTTGTGGTGATAATTATGGCACTGATGAATTTTGGATCTGTTGTGATATGTGCGAGAAATGGTTTCATGGTAAATGTGTTAAAATTACTCCTGCTAAGGCCGAACACATCAAGCAATACAAGTGCCCCGGCTGCAGTATGAAGAGGCCAAGAGTTTGA 789 0.4525 MEGIIGGGGGGGHPVPRTVDEVFSDYKGRRAGLIKALTTDVEKFYQLCHPDKENLCLYGYPNETWEVNLPVEEVPPELPEPALGINFARDGMQEKDWLALVAVHSDSWLLAVAFYFGARFGFGKNERKRLFQMINDLPTIFELATGNAKQLKDQPTAHNNGSNSKYKSSGKSRQSEPQAKGVKMSAPPKEEDDSGEEEEDDDDEQGATCGACGDNYGTDEFWICCDMCEKWFHGKCVKITPAKAEHIKQYKCPGCSMKRPRV* 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g3042 262 MobiDBLite consensus disorder prediction 191 206 - -
Tpr2g3042 262 Pfam Alfin 18 144 IPR021998 GO:0006355|GO:0042393
Tpr2g3042 262 SUPERFAMILY FYVE/PHD zinc finger 197 260 IPR011011 -
Tpr2g3042 262 SMART PHD_3 208 256 IPR001965 -
Tpr2g3042 262 CDD PHD_AL_plant 209 258 IPR044104 -
Tpr2g3042 262 PANTHER CPG BINDING PROTEIN 15 262 IPR045104 GO:0006355|GO:0042393
Tpr2g3042 262 ProSitePatterns Zinc finger PHD-type signature. 209 255 IPR019786 -
Tpr2g3042 262 ProSiteProfiles Zinc finger PHD-type profile. 206 258 IPR019787 -
Tpr2g3042 262 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 198 256 IPR013083 -
Tpr2g3042 262 MobiDBLite consensus disorder prediction 150 179 - -
Tpr2g3042 262 MobiDBLite consensus disorder prediction 150 206 - -
Tpr2g3042 262 Pfam PHD-finger 209 257 IPR019787 -
Tpr2g3042 262 PANTHER ALFIN-LIKE TRANSCRIPTION FACTOR-RELATED 15 262 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g3042 Tpr-Chr2 34670529 34674867 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g3042 1 259 Alfin-like Transcription Factor Family AT1G14510 75.290 3.29e-124 352
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Tpr2g3042 Alfin 1.4e-67 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g3042 - - gmx:100170698 436.032