Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g3041 ATGAATGATCCAAGTAGCCTCCACTTGAAGAAGGAACTTACTCAAATTCGAAAGGCTTCTCGTGTCTTGAGGGATCCCGGCACTACTTCTTCCTGGAAATCCACCACTTCCAGATCTGCCACTGCTGCTCCATTATTCTCCAGGAATAATCATAATCATATTCATCCTTCTCCTTCTCCTTCTGGGAATAACAACAACAAGAAAGTGTTCTTATACAACTGGAACAACTACAAATCATCACCATCCTTCAACCACCTTCAACAACAAGATGACCACTCTTCCTCCTCATCCCTTCTTGCTAGTTTAGAAGACGGTTTCAGCGACGCTCCCAACAACCTTATTGTTGATTCTAAGAGTGACGCTACTGGGACCCGCTCTTCCTTTTTCCCTAATTCAAATCCCAAAAGAACAATTCCTCTTCATCTTAATAAGAAAAAAAAGAACAAGCCAAAAAACAAGCCATTGCTCCTACTACCACGCCATTCAAACAATCATCATCATCATCACTCCGACGATGACGATGATTATTCTAACTCCATTTCCGGGGCTTCTCCTCTTCTTCTCAAACTCAAAAACCGCAGCAATTCCTCCAACTTCATCACAAAAATAAGAAGCTCCAAAGATGATGATTCTTCTTATACCTATAGTACCCCTGCATTGTCGGCTACCTCTTTCAACAGGTACTGTCGCCGTTATCCAAGCACCGTTGGATCCTTTGACGGCACAACAACCTCAATGAATGACGGTGATGACGAGATTGACGATGATCATTTGGATCTGCCTGGTCGTCAAGGATGTGGTATTCCTTGCTATTGGTCTAAGAGAACAACGCCCAGAAATAGAGTTGCTGGCTGTGGCAGTTGTTGTTCTCCTTCCCTCTCTGACACTTTCAGAAGGAAAGGTAGAAGCATTCTCTGTGGAACCCAATCTATGTATTCCAGACACTGCAGATCCTCTTCTTCCACTTCACTGCCGCACAACCGGAGAATGCATTTGAGGAATACTCGCGGAGGAGGAGGTGTTGTTCCTCTCCTCACTAGCCCTAGCAGTGGTGATGTTAGACGGGGTTCCTCGTCTATTGGAATTGGTAGGAGTAGGACCGATGATGAACTTTCTACTAACTTTGGTGAACTTGATCTTGAGGGATTGAGCAGACTTGATGGAAGAAGGTGGTCTTCCAGTTGTAGGAGTCAAGAGGGTTTGGAGATTGTCCCTCTCAATGAGGATGAAGAAGGCTCCTCCGAAAATGGTAGGAGTTTCAGCCATAAGTATAAGCCTTTGTTCTTTGGTGAAATCATTGGTCAGAATATTGTGGTTCACTCACTCATCAATGCTGTTTCCAGGGGCAGAATTGCTCCTGTCTATCTTTTTCAAGGTCCCCGCGGGACTGGCAAAACATCTACTGCTAGGATATTCGCCGCTGCCTTGAATTGTGTAGCTTCTGATGAAGGTAAGCCTTGTGGATACTGCAAGGAATGTGCTGATTTCGTTTCTGGCAAGAGCCTTGATCTGCTGGAAATTGATGGAACTAGTAAGAAAGGAATTGATAAAGCTAGATATCTTTTGAAAAGATTGTCGGTTGGGTCTTCTACGGAGGCATCCTCGCGATATACTGTTTTTGTTATTGACGAGTGTCACCTGTTAACCTCCAAGACATGGCTGGGATTTCTCAAGTTTCTCGAAGAACCACCCCAGCGAGTTGTATTCATATTTATAACATCCGATCTTGACAATGTACCACGAACAATACAGTCTCGATGCCAGAAGTACCTTTTCAATAAAATTAAAGATGGGGATATTGTGACCAGGTTAAGGAAAATATGTACTCAGGAGAACCTCGACGTGGAAACAGATGCACTGGACCTTATTGCCATGAATGCAGACGGTTCACTTCGGGATGCAGAGACAATGTTAGAGCAGCTTAGTTTGCTGGGGAAAAGAATCACTACTTCTCTTGTCAACGAACTTGTGGGAGTTGTTTCAGATGAAAAACTATTGGAACTTTTGGAGTTAGCAATGTCCGCAGACACTGCAGAGACGGTGAAAAGGTCCAGAGAATTGATGGACTCAGGAGTTGATCCAATGGTTTTGATGTCACAACTAGCTGGGCTTATTATGGACATCATTGCTGGATCATATGCAGTCGTTGATACCAAATCTGACGGTTCATTCGTCGGTGGTCGGAGTTTGAATGAAACGGAGTTGGAGAGGTTAAAGAATGCTTTGAAGCTTCTCTCAGAGGCTGACAAACAGTTAAGGACTTCCAGTGAACGCTCAACATGGTTTACAGCAACTCTTTTACAGCTTGGTTCCGTACCTTCTTCAGATCATACTCAGTCAAGCAGCAGCAGGAGGCAGAGCTGCAAGACAACTGAAGATGATCCATCAAGTGGTTCAAGAGATATTTCTTCTTTCAAGCACAAATCAGACCTCCAATATATGTCTCAAAAGTCAACACCCACTGCTTCCCACCTAAAAGCAGTAAATGACAGTTCCAGGCTTCAAATGGATATACCCTCAAAAATTAACGGTTTCAGCTTGAAATCAAAGCCGTCAAATAGCCCGGTTATAGATGATGGCTCCACAGTGGTCTCGTCGGATGATCTTATTGTTGGGAATACAATGTTTAGATGCATAGATTCAGGGAAGTTATGTGACATATGGGCATGTTGTATTGAGAGGTGCCACTCTAAGACATTAAGGCAGCTGCTACACGATCACGGAAAGCTTGTGTCCATATCTGAAGTTCAAGGTGTTCTTGTAGCATATGTTGCATTTGGGGACAAAGATGTTAAACTTAGGGTTGAAAGGTTTCTAAGTAGCATTACAAACTCCTTGGAAATTGTTCTTAGACGCATTGTGGAGGTCAGAATTATCCTCTTGCCAGATGGTGAAGGTGAAAAACATGTTAATCTGCCGGGTCTAAAGCAAAGTGCATCAACATTAGCAAGTGAGGACGAACAAAGGCGAGATCAATCTGTCATGGGTTCATCAGATATTCTGACCGAAGGAAATGGCGTTAAGGAAAGAAGACGGGATAATCCAGTGCAGAGAATTGAATCCATCATTCGTGAGCAGAGATTGGAAACTGCCTGGTTGCAGGCTGTAGAAAAAGGTTCCCCTGGATCGCTGAGTCGTTTGAGACCTGAGAAGAATCAAGTCCTGCCTCAAGATGGTGTCTATTGTGTAAACCCTATGGAGTCCATGGATTCAACAAGATATTCCTCTCATCAGCATATGGATGATGATAAAAATAGTGATCTTAAAATTTTGAGCCTTAAAAATGGAAGGGTTCTACAGAAGGATCAGAGTAGTAAAAGAGTCGACAGTTATCCCATGTCCCCAAGTATATTGCATGACAGCAGTTTAGCAATAATGTCTGGAAAAGATAACCCGGGTTATGAATCGGGTTCGGGAGCTGGAGGTTGTGGGTTTTTATGTTGGAATAAAAAGTCGAAGACTAAAAGGGCAGTGAAGATAAAAGGTACCCCAGTTGGAGGATCGCGTAAAGTTGCGCGTTCTACATTGTTTGGTGAGTGTGGTAAGAGGAAGAAAAAGGAGGGTAAAAGGTGA 3573 0.4341 MNDPSSLHLKKELTQIRKASRVLRDPGTTSSWKSTTSRSATAAPLFSRNNHNHIHPSPSPSGNNNNKKVFLYNWNNYKSSPSFNHLQQQDDHSSSSSLLASLEDGFSDAPNNLIVDSKSDATGTRSSFFPNSNPKRTIPLHLNKKKKNKPKNKPLLLLPRHSNNHHHHHSDDDDDYSNSISGASPLLLKLKNRSNSSNFITKIRSSKDDDSSYTYSTPALSATSFNRYCRRYPSTVGSFDGTTTSMNDGDDEIDDDHLDLPGRQGCGIPCYWSKRTTPRNRVAGCGSCCSPSLSDTFRRKGRSILCGTQSMYSRHCRSSSSTSLPHNRRMHLRNTRGGGGVVPLLTSPSSGDVRRGSSSIGIGRSRTDDELSTNFGELDLEGLSRLDGRRWSSSCRSQEGLEIVPLNEDEEGSSENGRSFSHKYKPLFFGEIIGQNIVVHSLINAVSRGRIAPVYLFQGPRGTGKTSTARIFAAALNCVASDEGKPCGYCKECADFVSGKSLDLLEIDGTSKKGIDKARYLLKRLSVGSSTEASSRYTVFVIDECHLLTSKTWLGFLKFLEEPPQRVVFIFITSDLDNVPRTIQSRCQKYLFNKIKDGDIVTRLRKICTQENLDVETDALDLIAMNADGSLRDAETMLEQLSLLGKRITTSLVNELVGVVSDEKLLELLELAMSADTAETVKRSRELMDSGVDPMVLMSQLAGLIMDIIAGSYAVVDTKSDGSFVGGRSLNETELERLKNALKLLSEADKQLRTSSERSTWFTATLLQLGSVPSSDHTQSSSSRRQSCKTTEDDPSSGSRDISSFKHKSDLQYMSQKSTPTASHLKAVNDSSRLQMDIPSKINGFSLKSKPSNSPVIDDGSTVVSSDDLIVGNTMFRCIDSGKLCDIWACCIERCHSKTLRQLLHDHGKLVSISEVQGVLVAYVAFGDKDVKLRVERFLSSITNSLEIVLRRIVEVRIILLPDGEGEKHVNLPGLKQSASTLASEDEQRRDQSVMGSSDILTEGNGVKERRRDNPVQRIESIIREQRLETAWLQAVEKGSPGSLSRLRPEKNQVLPQDGVYCVNPMESMDSTRYSSHQHMDDDKNSDLKILSLKNGRVLQKDQSSKRVDSYPMSPSILHDSSLAIMSGKDNPGYESGSGAGGCGFLCWNKKSKTKRAVKIKGTPVGGSRKVARSTLFGECGKRKKKEGKR* 1191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g3041 1190 MobiDBLite consensus disorder prediction 772 830 - -
Tpr2g3041 1190 Gene3D - 597 658 - -
Tpr2g3041 1190 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 145 1128 - -
Tpr2g3041 1190 Pfam DNA polymerase III subunits gamma and tau domain III 649 767 IPR022754 GO:0003887
Tpr2g3041 1190 MobiDBLite consensus disorder prediction 24 40 - -
Tpr2g3041 1190 CDD AAA 433 592 - -
Tpr2g3041 1190 SUPERFAMILY post-AAA+ oligomerization domain-like 666 767 IPR008921 GO:0003677|GO:0006260
Tpr2g3041 1190 MobiDBLite consensus disorder prediction 18 40 - -
Tpr2g3041 1190 MobiDBLite consensus disorder prediction 787 807 - -
Tpr2g3041 1190 PANTHER PROTEIN STICHEL-LIKE 1 145 1128 - -
Tpr2g3041 1190 MobiDBLite consensus disorder prediction 772 786 - -
Tpr2g3041 1190 Pfam DNA polymerase III, delta subunit 434 595 - -
Tpr2g3041 1190 Gene3D - 410 593 IPR027417 -
Tpr2g3041 1190 Coils Coil 728 758 - -
Tpr2g3041 1190 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 443 642 IPR027417 -
Tpr2g3041 1190 MobiDBLite consensus disorder prediction 808 830 - -
Tpr2g3041 1190 MobiDBLite consensus disorder prediction 123 152 - -
Tpr2g3041 1190 SMART AAA_5 451 602 IPR003593 -
Tpr2g3041 1190 CDD HLD_clamp_pol_III_gamma_tau 595 658 IPR045085 -
Tpr2g3041 1190 TIGRFAM dnaX_nterm: DNA polymerase III, subunit gamma and tau 419 769 IPR012763 GO:0003887|GO:0005524|GO:0006260|GO:0009360
Tpr2g3041 1190 MobiDBLite consensus disorder prediction 980 1013 - -
Tpr2g3041 1190 MobiDBLite consensus disorder prediction 123 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g3041 Tpr-Chr2 34662481 34669057 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g3041 415 710 Core DNA Replication Machinery Family AT1G21690 24.671 4.42e-16 79.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g3041 - - gmx:100791561 1497.64