Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g3038 ATGGAACTTTCCAGCAGCCAAGATGGGGATATCCCAATCCCAATAATAAACAACACTAATAATTATGGTGGTGATGTTAGTTCTAATGGACATGCTCAACATCACATGCTTCATCACCATCATCATCATGTTCATGACCATCCTCCTACACTACACCACAACCATAATCACGGTAATATTATAATATCATCTTCCTCAACTGCAGCAGCAGTACCAGTGGCAGTAGTACCTCAAAACCCTTCAATTAATGGCACTACCACCACCACCACCTCTATGCAAGCTGCTGTCAGTGGTGTGGAATTAGATCATGATCACTCTTCCTACAAGAAATCATCATCATCAGTTGTGAGGTACAGAGAATGTCTTAAAAACCATGCAGCTGCAATGGGAGGGAATGCCACAGATGGTTGTGGTGAGTTCATGCCAAGTGGTGAACAAGGTACCATTGAGGCACTCAACTGCTCTGCCTGTCATTGCCACAGAAACTTCCACAGAAAAGAGGTTGAAGGTGATAGTACTGAGGAAGACAGCTACCACCACCACCATAACTCTTCATCCGCCTTTAACTTCAACTTCAACAGGCAGCAGCACCACCACAGCATGAGGAAATTCATGTTACCTCTTCCTGATCTTGGCTACCACCACCACCACCACCACCCTACTCCTCCTAATAATACTGCATCAGCAGCCACCACAGGTAACAACAACAACAACAACATTCTTCCTTCTAGAGCTGTACCACCACCCCCACATGGACATGGCCACATCATTATGCCATTCAACTACAACATACCTTCTGAATCTGATGAACAAGAAGATCAGGCGGGTAGACCACCAACTCATCATCAGCAGCAGCAGCAGGTGGTGATGAAGAAAAGGTTCAGAACAAAGTTCACACAGGAACAGAAGGACAAAATGTTCAACTTTGCTGAGAAAGTTGGGTGGAAATTTCAGAAGCAAGAGGAATCTCTAGTGCAACAGTTCTGCCAAGAGATTGGAGTCAAAAGAAGAGTGCTCAAGGTTTGGATGCATAACAATAAACACAATCTCGCCAAAAAGCAATTACAAGATCAACATACTACTACTGCTAATCATCTCCCAACTCCTTAA 1110 0.4405 MELSSSQDGDIPIPIINNTNNYGGDVSSNGHAQHHMLHHHHHHVHDHPPTLHHNHNHGNIIISSSSTAAAVPVAVVPQNPSINGTTTTTTSMQAAVSGVELDHDHSSYKKSSSSVVRYRECLKNHAAAMGGNATDGCGEFMPSGEQGTIEALNCSACHCHRNFHRKEVEGDSTEEDSYHHHHNSSSAFNFNFNRQQHHHSMRKFMLPLPDLGYHHHHHHPTPPNNTASAATTGNNNNNNILPSRAVPPPPHGHGHIIMPFNYNIPSESDEQEDQAGRPPTHHQQQQQVVMKKRFRTKFTQEQKDKMFNFAEKVGWKFQKQEESLVQQFCQEIGVKRRVLKVWMHNNKHNLAKKQLQDQHTTTANHLPTP* 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g3038 369 SUPERFAMILY Homeodomain-like 283 352 IPR009057 -
Tpr2g3038 369 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 117 168 IPR006456 -
Tpr2g3038 369 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 33 353 - -
Tpr2g3038 369 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 4 33 353 - -
Tpr2g3038 369 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 118 167 IPR006456 -
Tpr2g3038 369 Pfam ZF-HD protein dimerisation region 116 168 IPR006456 -
Tpr2g3038 369 MobiDBLite consensus disorder prediction 267 287 - -
Tpr2g3038 369 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 291 347 IPR006455 -
Tpr2g3038 369 Gene3D - 278 353 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g3038 Tpr-Chr2 34638593 34641141 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g3038 106 353 ZF-HD Transcription Factor Family AT2G02540 45.946 6.94e-68 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Tpr2g3038 ZF-HD_dimer 4e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g3038 - - mtr:MTR_4g134580 449.514