Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g3030 ATGGATGAGGAGCGGGGCCTGGAGCATATGATACCAAAATCAAGATCATCATCATCATCATCATCTTCATCATCTTCTGCAGCAGGATCACCCAGATCTGGGCTCATAGAGCCTCTGCTTGTCAATAACAGCAGGCTCAATACTACTTCCCAAATTGCCATTGTTGGAGCCAAAGTTTGTCCGATTGAAAGTCTCGACTACGAGATCATTGAGAATGATTTATTCAAGCAAGACTGGAGTTCTAGAGGAAAGGCTGAGCTAGCACAGTATATGATTCTAAGATGGGCCATTGCACTTCTTATTGGTTTAGGCACAGGCCTTGTTGCCTTCTTTAACAACATTGGAGTTGAGAATATTGCCGGTTTCAAGCTTCTCTTCACCAACGATCTCATGCTTAATCACAAATATTATAAGGCCTTTGCAGTTTATGCTAGTTGTAATATGGTTTTAGCCATTGCTGCAGCATCCCTCTGTGCCTACATTGCCCCTGCAGCAGCAGGATCTGGCATACCTGAGGTAAAGTCATATCTCAACGGCGTAGACGCTCCTTCTATATTGGCTCCAACCACCCTCTTTGTAAAGATTTTTGGTTCAATATTTGGGGTTGCAGCTGGTTTTGTTGTGGGTAAGGAAGGGCCTATGGTGCATACTGGTGCTTGCATAGCTAATTTACTTGGACAAGGTGGTTCTGAAAAATATGGACTAACCTGGAAAGGATTCAGATATTTTAAAAATGACAGAGATCGAAGGGATTTTATCACATGTGGTGCGGCTGCTGGTGTTGCCGGTGCCTTTCGTGCCCCAGTTGGTGGTGTCCTTTTTGCACTTGAAGAAGCGGCTTCTTGGTGGAGGAGTGCTCTTTTGTGGCGAACATTTTTCACTACAGCTGTAGTAGCTGTAGTGTTGAGAGGTTTCATGGAATATTGCAAAGGTGAAAAATGTGGTCTTTTTGGGGAAGGAGGTTTGATAATGTTTGATGTCAATTCAGTAAAGCCTGCATACAGCATACCTGACTTACTGGTAGTTATATTTCTTGGAGTTATTGGAGGTCTTTTGGGAAGCCTTTATAATTATCTCGTGGATAAGGTCCTTCGTACTTACAGCATCATTAATGAGAAAGGTCCTATTTTTAAAATAATACTTGTGATGATTATATCATTTTTGACCTCTTGCTGTTCATTTGGGGTTCCATGGCTATCAAAGTGCATCCCTTGTCCTTCTCATGTTGGGGATCAGTGCCCAACCGTAGGGCGCTCTGGACACTACAAGAATTTCCAGTGTCCTCCTAATCACTACAATGACCTCGCCTCTCTCTTTTTTACAACCAATGACGATGCCATCCGCAACCTCTTTATTGCTGGCTCTGACAAAAGATTCCTGCTCTCCAGTCTCCTAATATTCTTTGTAGCAATTTACTTTCTGGGAATCATCACTTACGGCATTGCAATTCCGTCAGGGCTCTTTATTCCGGTGATACTTGCAGGGGCCTCGTATGGTCGTGTTGCAGGAAGTTTGTTAAGTCCATTCACAGTTTTGGATGTGGGCTTGTTTGCACTCTTGGGAGCTGCATCCTTCCTTGGTGGCACAATGAGAATGACTGTTTCTCTTTGCGTCATACTTCTTGAACTTACTAATAACCTCCTCATGCTACCATTGGTCATGTTGGTTCTCCTTATCTCAAAGTCTGTGGCAGATTGTTTTAACAAAGGCGTTTATGATCAAATAGTGGAAATGAAGGGGTTGCCTTATTTGGAAGCACACGCAGAACCGTACATGAGGCAGTTAGTTGCAGGTGATGTTGTTTCTTGTCCGTTGGTTACATTCTCTAAGATTGAAAAAGTGGGGAATATTGTGCACACTTTAAAGGTGACGCGACATAATGGGTTCCCTGTAATTGACGAGCCCCCATTATCAGATGCACCAGAGTTGTGTGGATTGGTTTTGAGGTCACATTTGCTTGTAATTCTTAAACACAAGGTATTTACGACGATGCAAGAGGGGATGCCCTTGATTATTAATAAGTTGAGGCCACATGATTTTGGAAAGCCAGGTTCAGGGAAGGGGATAAAGCTGGATGATTTAGAGATATCAGAGGAGGAGATGGAAATGTATGTTGATCTGCATCCTATTACCAACAGGTCACCATATACAGTTATAGAGACATTGTCTTTGGCTAAAACAGCTGTTCTTTTTCGCGAGCTTGGCCTCAGGCACTTGTTGGTCCTCCCAAAGACACCTGGTAGGCTTCCCATTGTGGGGATCATGACTAGGCACGACTTCATGCCGGAACATATATTGGGATTATACCCTCAGTGCAATCCCTACAACAAGTAG 2334 0.434 MDEERGLEHMIPKSRSSSSSSSSSSSAAGSPRSGLIEPLLVNNSRLNTTSQIAIVGAKVCPIESLDYEIIENDLFKQDWSSRGKAELAQYMILRWAIALLIGLGTGLVAFFNNIGVENIAGFKLLFTNDLMLNHKYYKAFAVYASCNMVLAIAAASLCAYIAPAAAGSGIPEVKSYLNGVDAPSILAPTTLFVKIFGSIFGVAAGFVVGKEGPMVHTGACIANLLGQGGSEKYGLTWKGFRYFKNDRDRRDFITCGAAAGVAGAFRAPVGGVLFALEEAASWWRSALLWRTFFTTAVVAVVLRGFMEYCKGEKCGLFGEGGLIMFDVNSVKPAYSIPDLLVVIFLGVIGGLLGSLYNYLVDKVLRTYSIINEKGPIFKIILVMIISFLTSCCSFGVPWLSKCIPCPSHVGDQCPTVGRSGHYKNFQCPPNHYNDLASLFFTTNDDAIRNLFIAGSDKRFLLSSLLIFFVAIYFLGIITYGIAIPSGLFIPVILAGASYGRVAGSLLSPFTVLDVGLFALLGAASFLGGTMRMTVSLCVILLELTNNLLMLPLVMLVLLISKSVADCFNKGVYDQIVEMKGLPYLEAHAEPYMRQLVAGDVVSCPLVTFSKIEKVGNIVHTLKVTRHNGFPVIDEPPLSDAPELCGLVLRSHLLVILKHKVFTTMQEGMPLIINKLRPHDFGKPGSGKGIKLDDLEISEEEMEMYVDLHPITNRSPYTVIETLSLAKTAVLFRELGLRHLLVLPKTPGRLPIVGIMTRHDFMPEHILGLYPQCNPYNK* 778
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g3030 777 CDD CBS_pair_voltage-gated_CLC_euk_bac 587 763 - -
Tpr2g3030 777 SUPERFAMILY CBS-domain pair 588 761 IPR046342 -
Tpr2g3030 777 SUPERFAMILY Clc chloride channel 72 587 IPR014743 -
Tpr2g3030 777 CDD ClC_6_like 63 584 - -
Tpr2g3030 777 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 36 773 - -
Tpr2g3030 777 Pfam Voltage gated chloride channel 152 565 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Tpr2g3030 777 MobiDBLite consensus disorder prediction 12 31 - -
Tpr2g3030 777 Gene3D Clc chloride channel 86 584 - -
Tpr2g3030 777 PRINTS Plant CLC chloride channel signature 68 76 IPR002251 GO:0005247|GO:0006821|GO:0016020
Tpr2g3030 777 PRINTS Plant CLC chloride channel signature 279 287 IPR002251 GO:0005247|GO:0006821|GO:0016020
Tpr2g3030 777 PRINTS Plant CLC chloride channel signature 293 303 IPR002251 GO:0005247|GO:0006821|GO:0016020
Tpr2g3030 777 PRINTS Plant CLC chloride channel signature 311 318 IPR002251 GO:0005247|GO:0006821|GO:0016020
Tpr2g3030 777 PRINTS Plant CLC chloride channel signature 435 451 IPR002251 GO:0005247|GO:0006821|GO:0016020
Tpr2g3030 777 PANTHER CHLORIDE CHANNEL PROTEIN CLC-C 36 773 - -
Tpr2g3030 777 MobiDBLite consensus disorder prediction 1 31 - -
Tpr2g3030 777 Gene3D - 585 766 IPR046342 -
Tpr2g3030 777 PRINTS Chloride channel signature 163 180 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Tpr2g3030 777 PRINTS Chloride channel signature 194 213 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Tpr2g3030 777 PRINTS Chloride channel signature 258 277 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Tpr2g3030 777 PRINTS Chloride channel signature 483 503 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Tpr2g3030 777 PRINTS Chloride channel signature 515 531 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Tpr2g3030 777 PRINTS Chloride channel signature 533 552 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Tpr2g3030 777 PRINTS Chloride channel signature 571 585 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g3030 Tpr-Chr2 34562967 34566527 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g3030 34 774 Ion Channels AT5G49890 75.639 0.0 1113
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g3030 K05016 - jre:108988922 1136.32