Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g3002 ATGGCTTCTGCTAGCCTTGGAAATGGTGCTGGTGTCGGCAGTAGTTCCAGGTCTGCTGCTGCCTTAAGAGGTTCATCTAGTTCTGTTGATTGGCTTGGTAGAGAGATGCTTCAGATGAGGCTCAGAGACAAACTCAACCGTGTTGAAGACGATGACAATGACAATGACAATGATGATGGCAGAGAGAGTGAGCCTGATATCATTGATGGTGTGGGTGCTGAAACAGGACATGTAATAAGAACCAGTATCGGTGGTGGAAGAAACGGTCAATCTAAACAGAATGTTAGTTATATCGCCGAACATGTAGTTGGGACGGGCTCTTTTGGCACTGTTTTTCAAGCAAAATGTAGAGAAACAGGAGAGATTGTTGCCATCAAGAAGGTTCTCCAGGACAAGCGTTACAAGAATAGAGAGTTACAAATTATGCAAATGCTGGACCATCCAAATATTGTTGCCCTGAGGCATTGTTTCTTTTCGACCACCGACAAAGAAGAGCTTTACTTGAATCTTGTACTTGAATATGTTCCTGAAACGGTGAATCGTGTTGCCAGGAACTATAGCAGGATTAATCAGCGAATGCCTTTAATATACGTGAAACTTTATACGTACCAGATATGCAGGGCACTTGCTTATATACATAATTGCATTGGCATCTGTCACCGTGACATCAAACCTCAGAACCTACTTGTGAACCCACACACCCATCAGCTGAAACTATGTGATTTTGGTAGTGCGAAAGTGTTGGTGAAAGGAGAACCTAATGTTTCGTATATCTGTTCAAGATACTATCGTGCCCCAGAACTTATATTTGGTGCGACTGAATATACAACTGCCATAGATATATGGTCAACTGGTTGTGTAATGGCTGAATTACTTCTTGGACAGCCTTTGTTTCCTGGGGAGAGTGGAGTTGATCAGCTAGTTGAAATCATCAAGGTTTTGGGAACTCCTACCAGGGAGGAGATAAAGTGCATGAACCCAAATTATACTGAATTTAAGTTTCCCCAGATAAAACCTCATCCATGGCACAAGGTCTTTCAGAAACGTTTACCTCCGGAAGCAGTTGATCTTGTCTGTAGGTTCTTTCAGTACTCTCCTAATTTGAGATGCACTGCTTTGGAAGCATGCATTCACCCCTTCTTTGATGAATTGAGGGACCCAAGCACCCGCCTTCCCAATGGTCGCCCACTGCCTCCGCTGTTTAACTTTAAACCTCAGGAACTTTCTGGTATTCCACCCGATGTCATCAACCGGCTTATTCCAGAACATGCTCGTAAACAGAACTTATTTATGGCTTTGCACACCTAG 1308 0.4335 MASASLGNGAGVGSSSRSAAALRGSSSSVDWLGREMLQMRLRDKLNRVEDDDNDNDNDDGRESEPDIIDGVGAETGHVIRTSIGGGRNGQSKQNVSYIAEHVVGTGSFGTVFQAKCRETGEIVAIKKVLQDKRYKNRELQIMQMLDHPNIVALRHCFFSTTDKEELYLNLVLEYVPETVNRVARNYSRINQRMPLIYVKLYTYQICRALAYIHNCIGICHRDIKPQNLLVNPHTHQLKLCDFGSAKVLVKGEPNVSYICSRYYRAPELIFGATEYTTAIDIWSTGCVMAELLLGQPLFPGESGVDQLVEIIKVLGTPTREEIKCMNPNYTEFKFPQIKPHPWHKVFQKRLPPEAVDLVCRFFQYSPNLRCTALEACIHPFFDELRDPSTRLPNGRPLPPLFNFKPQELSGIPPDVINRLIPEHARKQNLFMALHT* 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g3002 435 Gene3D Transferase(Phosphotransferase) domain 1 177 425 - -
Tpr2g3002 435 Gene3D Phosphorylase Kinase; domain 1 83 176 - -
Tpr2g3002 435 Pfam Protein kinase domain 99 381 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr2g3002 435 MobiDBLite consensus disorder prediction 1 27 - -
Tpr2g3002 435 MobiDBLite consensus disorder prediction 1 25 - -
Tpr2g3002 435 ProSitePatterns Serine/Threonine protein kinases active-site signature. 218 230 IPR008271 GO:0004672|GO:0006468
Tpr2g3002 435 SUPERFAMILY Protein kinase-like (PK-like) 96 408 IPR011009 -
Tpr2g3002 435 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 1 432 - -
Tpr2g3002 435 SMART serkin_6 97 381 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr2g3002 435 ProSiteProfiles Protein kinase domain profile. 97 381 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr2g3002 435 CDD STKc_GSK3 92 384 IPR039192 -
Tpr2g3002 435 MobiDBLite consensus disorder prediction 44 71 - -
Tpr2g3002 435 ProSitePatterns Protein kinases ATP-binding region signature. 103 127 IPR017441 GO:0005524
Tpr2g3002 435 PANTHER SHAGGY-RELATED PROTEIN KINASE DELTA-RELATED 1 432 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g3002 Tpr-Chr2 34293396 34298028 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g3002 103 389 Core Cell Cycle Gene Families AT1G76540 35.254 1.07e-57 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Tpr2g3002 Pkinase 1.1e-64 CL0016